Salvelinus namaycush (lake trout): 120046439
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Entry
120046439 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: serum response factor-like
KO
K04378
serum response factor
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120046439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120046439
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
120046439
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GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
120046439
NCBI-ProteinID:
XP_038847596
UniProt:
A0A8U0QS03
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Position
Sna4:31583617..31635906
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AA seq
609 aa
AA seq
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MSCAVILLTRAPAVGWRFQRPGPLNRMLPSQAGSAPSGNGSASVSGNTGHGSVVIGSGIR
PVLVRAVQTTTGVSDSTGAVGMLGGNGPEVGPRGGARPVSGTGLTTLQTAGHGGIGSLNT
GVGVHGGSRYDPDKKCAPMGCSGSDADSDSGDDDDMMGSIRDNRRGVKRERLEMEAAVTG
QETGVPPGAYGLVPGGVAGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYE
LSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRNDPSTDQ
RMSATGFEETDLTYQVSESESLGETKDQLKPAFTVASLPGTTSSHAPTAPTTSTSMQVSS
GPSFPITNYLAPVSASSNVNANGTILKTTGSSGGQVMQLPSGFTFMSAGTPLPPGTPTIP
LSQLHQHSLAIQGQTLTSSQLTQQGQQAVFRFPTAVSLGGGMTQQLQAIQVHPTTHANDS
SSEISQTSSVSTATIVTSSVPTSMAGHMMYTSPHTVMYASTPTLTDGGLAVLNTFSQGPS
AMQVSHGQCQDTGAVPQVFLTAPSGTMQIPVSAVQLHPMVISQKSRHSSSNLTXLQMVNL
DTTQSAKND
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtgccgtaattttactaacacgcgctccagcagtcggctggcgatttcagaga
ccgggtcctctaaatagaatgttaccaagccaggctggatcagcaccatctggaaacgga
tcagcgtctgtcagtggtaacacaggtcacggttctgtggttattgggagtggaattcgc
cccgtgttggtcagagcagtgcagacgacaactggggtcagcgacagcaccggtgcggtt
gggatgttggggggcaacggtccagaagtgggtccaagaggtggggcaagaccagtgagc
gggacgggactgacgactctacagaccgccggccatggaggcatcggaagtctgaatacg
ggagttggggttcacggaggcagccggtacgacccagacaaaaagtgtgcgcccatgggg
tgcagtgggtcagacgctgattcggactcgggggatgatgacgacatgatgggatcaatc
agagacaacagaagaggtgtaaagcgggagagactggagatggaggctgcggtgacaggg
caggagactggggtaccaccgggggcttatggtttagtccccggaggtgttgctggcgca
aagccggggaagaagacacgtggacgtgtaaagataaaaatggaatttatcgacaacaag
ttgaggcgatacacaacttttagcaagaggaagacaggcataatgaagaaggcttatgag
ctctccacgttgacaggaacccaggtcctgctactggtggccagcgagacgggccacgtc
tacacgttcgccacgcggaagctccagcccatgatcaccagcgagacaggcaaggccctc
atccagacgtgcctcaactctccggactccccgccccgcaacgacccctccactgaccag
cgtatgagcgccacaggcttcgaggagacggaccttacctaccaggtgtctgagtcggag
agccttggggagaccaaggaccagctaaagcctgcgttcacggtggccagcctcccgggc
accaccagttcccacgcgcccacggcccccaccacctccaccagcatgcaggtaagcagc
gggccctccttcccaattaccaactacctggcgcccgtctcggccagcagcaacgtcaat
gccaacggcaccatcctcaagaccactggttcctccggagggcaggtcatgcagctgccc
agcggcttcaccttcatgtcagcaggcacgccgctcccccccggcacccccaccattcct
ctcagccagctgcaccagcactccttggccatccagggacagacgctcacctcatcgcaa
ctgacacagcagggccagcaggccgtcttccgctttcccactgcagtctccctaggggga
gggatgacccagcagctgcaggccatccaggtgcaccccaccacacatgccaacgacagc
agctcggagatctcccagacctcctctgtctccactgcgaccatcgtcacatcgtcagtg
cccacatctatggcgggtcacatgatgtacaccagcccccatacagtgatgtatgcgtcc
acgcccacgctgaccgatggtggcctggctgtgctcaacaccttttcccagggcccctcg
gccatgcaggtgtcccatggacagtgccaggacacaggtgctgtccctcaggtattcctt
acggcaccctcgggcaccatgcagatcccagtctcggcagtgcagctacacccaatggtg
attagtcagaagtcgaggcacagcagcagtaacctgacanngctgcagatggtcaacctg
gacaccacacagagcgctaagaacgactga
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