Salvelinus namaycush (lake trout): 120046478
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Entry
120046478 CDS
T07522
Symbol
igdcc4
Name
(RefSeq) immunoglobulin superfamily DCC subclass member 4 isoform X1
KO
K22657
immunoglobulin superfamily DCC subclass member 4
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120046478 (igdcc4)
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
DCC/UNC5 family
120046478 (igdcc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Ig_3
I-set
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
V-set
C2-set_2
Fn3_VIN3
C2-set_3
Ig_ILCR1
Motif
Other DBs
NCBI-GeneID:
120046478
NCBI-ProteinID:
XP_038847680
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All DBs
Position
Sna1:complement(60102877..60153063)
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AA seq
1369 aa
AA seq
DB search
MHVASDIAGCRDPHAALPLCWKSMLYMAVEAIWVFYLLSLGFCGPSVQEKPVTVELSCGA
GPVLVVLEPGQPLLLDCHLGATSLDTPLNVTWLQDGLPVLEGEGNSLRTLANGSLLVLPT
SMDGRTPQGVEGGYSCVSAGPFGALTSRTIAVHLATLSRFHQDPEAQVVPLGGASRFECQ
IDGVPTPRITWEKDQEPIPSQPRFISLPNGVLQILGAVKEDGGAYRCVASNSARKRFSQD
AILTVTTGPGPAQSEVVIVAPPQNATVVQGRPAVMECMAQGGQPKPLVSWSRQDGKPIAT
DVVVLETNLVIPNTRRYHAGVYVCRANKPKTREFVIAAAELHVPAPPVILQPPETVSLSR
GNTARFVCNSSGEPPPALHWLKNGKPVKSNGRVKTQSPGVLLINQLGLDDAGYYQCIADN
ALGTACATAKLSVIVREGLPSPPHQLSATPHSSTTALLTWERPEHNRDQIIGFSVHYQPT
SGSDHMEYQFAVNNDTTEYHVKELLPHTAYTFYVVAYSPMGASRPSLPVTVEMLEDVPSA
PPQLSLLSTSPTDIRVMWLPLSSQHSRGAVTRYRIDYSTLEQGEHIAIYWHGGHSTTLLS
CVIITLSVDNVFSVEVGGNETQLTLRELQPNQAYRLRMAAGTGAGFGVPSEWSQHHTPAH
FNHSMVIFAPTELKVRAKMNSLHVTWQPPPNHTQISGYKLFCREVVGEELTNGETHPERE
RVRRMEAHTIKLRKRVKHHEVSSLVPDRLYEVKVWAFNKQTDGYAAGWKGRTEKAHGKAP
PKGNPPPLPPSSIKATANSSTSIWLRWEKPRFSNVRIINYTVRCSPAGIRNASLVSYYTS
SAQEILLGALKPYTRYELAVQSIGGDVVGPFSGTVEESTLTDVPSTPPAELQLSALDSSS
VLVNWRTPVEPNGIIISYRILYTINLSQPEHLWNNLSQDGGWVAEGTIMSAEVTGLSSGT
QYFFKMRASTEVGVGPYSPVKDVRTPPRKYELDIHAVTGIIVGVCLGLLSILLCMCVSFR
NGKAREVSGGLDSTALPPQYRRGGRSVPTMVPECSDCHELETLMPLGSLDHDHDLAQPLT
EPTEEHSLMGNVGVGDDALGAELKAAWNGSVSCNWANRITKYRDTITEDSPTLNNGTLDM
ANTENGKGDPEDRLGSSLCSSNQVEAEVIVHSELNDLEKEQQEARSDKDEDSQATRGPSL
SEAAYSPVRQPAQAAQHPGEPVRQPAQAPQHPGEPVRQPAQAPQHPGEPVRQPAQAPQHP
SPGEESLETQPLPKVPPGPVLEPVFNHNGQPEGMVGGMVGVAAQLTVDVGRHTGTGLTNG
FHSTKPLRTGQETLGNGDSRHCPPLPSPSPFVSTGLVHSNSAAHSYLCP
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttgctagcgatatagctggctgtagagacccgcacgctgctttacccctctgc
tggaaatcaatgctttacatggcggtggaggctatctgggttttctatctactttcgttg
ggcttctgtggaccatccgttcaagagaagcctgtaacggtggagctaagctgtggggcg
gggcctgtccttgtggtgctggagccaggacagcccctgctgctggactgtcacctgggg
gccacgtcactggacacgcccctcaacgtcacctggctgcaggatgggctccccgtgctg
gagggggaggggaactccctcaggacccttgccaacggatcactgctggtgctgcccacc
tctatggatggtcggacacctcaaggggtggaggggggctacagctgtgtgagcgccggc
ccctttggagccctgaccagccgcaccattgccgttcacctggccacgctgtctcgtttc
catcaggacccagaggcccaggtggtgccccttgggggtgcttcccgctttgagtgccag
atagacggagtgcccacaccaaggataacctgggagaaggaccaggaacccatccccagc
cagcctaggttcatctctctccctaacggtgtgctccagatcttgggggcggttaaggag
gatgggggtgcgtaccgctgtgtggcctccaactctgcccggaaacgcttcagccaggat
gccatcctcactgtcactacaggtcctggccctgcccaaagtgaggtagtgattgtggca
cctcctcagaatgccacagtggtgcaggggcgtccagcagtgatggagtgcatggcccag
ggagggcagcccaaacccctggtgtcctggagcagacaggatgggaagcccatcgccacc
gacgtggttgtcctggaaaccaacctggtgatccccaacacacgccgttaccatgcgggg
gtctacgtctgccgtgccaacaaaccaaagacccgcgagtttgtcatcgctgcggctgaa
ctgcatgtgccagccccaccagtgatcctccagcccccagagacggtttctctctctcgg
ggaaacacagccaggtttgtgtgtaacagctctggggagcctcccccggcactgcactgg
ctgaagaatggtaagccggtcaagtctaacggaagggtgaagacccagagccctggggtg
ctgcttatcaaccagctgggcctggacgacgcagggtactaccagtgcatcgctgacaac
gctctggggacggcctgcgccacagccaagctgtctgtcattgtgagagagggtctaccc
agcccgccacaccagctctctgccacgccccactccagcaccaccgcccttctcacctgg
gaacggcctgaacacaacagggaccagattataggcttctctgtgcactaccagcccact
tcaggctctgatcacatggaataccagtttgctgtgaacaacgacaccacagagtaccat
gtgaaggagctactgccacacacagcctataccttctacgtggtggcctactcccccatg
ggagccagccgcccgtcactgcccgtcaccgtggagatgctggaggacgtacccagtgcc
cctccacagctgtccctgctcagcacctcccctacagacatcagagtgatgtggctgccc
ctatcctcccagcacagcagaggagctgtcacccgctaccgcatcgactactccacactg
gaacaaggcgagcacatcgccatctactggcacggaggccacagtactacactgctgtcc
tgtgttattataacgctgtccgtggacaacgtgttttctgtggaggtgggggggaatgag
actcagcttaccttgcgagagctacagcctaaccaggcctatcgactgcggatggcggcg
ggaacgggagcaggctttggtgtgccctctgagtggtcacagcaccacaccccagcccac
tttaaccacagcatggtgatctttgctcccacagagctgaaggttagggccaaaatgaac
tccctccatgtcacatggcagcccccgcccaatcacacgcagatctccggctacaagctc
ttttgcagggaggtggttggtgaagagctgaccaatggggagactcatcctgagagggag
cgggtgaggaggatggaggcccacaccatcaagctccgcaagagggtcaaacatcatgaa
gtctctagtctggtccctgacagactatatgaagtgaaggtgtgggccttcaataagcag
acggatggctatgctgcaggatggaagggcaggacagagaaggcacatggcaaagcaccc
cctaaggggaacccccctcccctgccccccagcagcatcaaggctacagccaacagctcc
acatccatctggctgcgctgggagaaacctcgcttcagcaacgtccgcatcatcaactac
accgtacgctgcagcccggccggcatcagaaacgcatcgcttgtgtcctactacaccagc
tctgctcaggagatcctcttgggggcgctaaaaccctacacccgttatgagctggctgtg
cagtccattggaggagacgtggttggtcccttcagcggcaccgtggaggagtccactctc
actgacgtaccctccacccccccagcggagctgcagctcagtgccttggactcctcctct
gtgttggtgaactggcgtacgcctgtggagcccaatggcatcatcatcagctacaggatc
ctatacaccatcaacctcagccagcctgagcatctgtggaacaacctctcccaagatggt
gggtgggtggctgaagggaccatcatgagtgctgaggtaacagggctgtctagtggtaca
caatacttctttaagatgagggcgtccactgaggtgggggtggggccttactccccagtg
aaggatgtgcgcactcctcccaggaaatatgagctggacatccatgcagtgacaggcatc
atagttggtgtgtgtctggggctgctcagcattctcctttgtatgtgtgtcagcttccgc
aacggcaaggccagagaggtgtctggagggctggactccacagctctacctccacagtac
cgccgggggggtaggtctgtgcccaccatggtgccagaatgcagtgattgccatgagcta
gagaccctgatgcccctgggcagcctggaccatgaccatgacctcgcccaacccctcaca
gagcccactgaggagcacagcctcatgggtaatgtaggagtaggggacgatgccctagga
gctgagctcaaggctgcttggaatgggtcagttagttgtaactgggccaaccggatcacc
aaatacagggataccatcacagaggactctccaacgctcaacaatggaactttggacatg
gccaacacagagaatggcaagggcgaccctgaggaccgactgggctcctccctgtgcagc
agtaaccaggtggaggcagaggtcatagttcactctgagctgaacgacctggagaaggag
cagcaggaggcgcggagtgacaaggatgaggactctcaggccaccagggggccgtcattg
tccgaggcagcttactccccagtcagacagcctgcccaggcggcacaacatccaggggag
ccagtcagacagcctgcccaggcaccacaacatccaggggagccagtcagacagcctgcc
caggcaccacagcatccaggggagccagtcagacagcctgcccaggcaccacaacatcca
tcaccaggggaggagtccctagagacacaacccctgcccaaggtcccacccggccctgtc
ctggagccagtgttcaatcacaatgggcagccagagggcatggttgggggcatggtgggc
gtggcagcccagctgactgtagatgtggggcggcatacgggaacagggctcaccaacggc
ttccactccaccaagcccctgcggacagggcaggagaccctggggaacggggactccaga
cactgcccccctctcccgtccccctctcctttcgtcagcaccggtcttgtccactctaac
tctgcagcgcacagctacctgtgcccttag
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