Salvelinus namaycush (lake trout): 120046604
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Entry
120046604 CDS
T07522
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04517
IgSF CAM signaling
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120046604
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120046604
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
snh04812
]
120046604
Cytoskeleton proteins [BR:
snh04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
120046604
Intermediate filaments
Intermediate filament-binding proteins
120046604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
CH_2
PH_11
Motif
Other DBs
NCBI-GeneID:
120046604
NCBI-ProteinID:
XP_038847904
UniProt:
A0A8U0UD85
LinkDB
All DBs
Position
Sna4:complement(52239303..52318010)
Genome browser
AA seq
2360 aa
AA seq
DB search
MELQRATSMPGPLSPGPIFPGSHSPGPLSPSSGPGPSLASSPGPDPGYSAKQAAFNYNQL
EGRFKQLQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGEKLP
KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD
IRVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLID
FDKLKKSNAHHNLQNAFNLAEQHLGLHKLLDVEDISVDHPDEKSIITYVVTYYHYFSKMK
ALKVEGKRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRRFANSLVGVQQQL
QAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYIPRDGKLISDINKAWERLEK
SEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAAT
KKHEAIETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARR
IRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHTLVEADIAIQA
DRVKAVNNNAQKFAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAAERCARLEESRRLW
KFFWEMAEEEGWIREKEQILSSEDCGKDLTGTVRLLSQHRAFEDEMIGRAGHLQQTIKQG
EELVAADHFGADKIRERIQDIQEQWAALERLSAVRKARLEEACNLHQFQADADDIDAWML
DVLRIVSSADVGHDEFSTQALVKKHKDVAEEIAGYRPVIDALHEQSKTLPGEQTGSEEVQ
GRLSGIEERYKEVAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKL
EDLEVVQHRFESLEPEMNSQASRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFR
DLVDLKKDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGM
ERDLTAIEDKLGELGKEGERLAAEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEA
SKLQQFLRELDDFQSWLSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEVDYQKM
RDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQA
EAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKINAVVDTGRRLVSDKNI
NADRIQEKVDSIDERHKKNRLAASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDM
SYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLIAEKPETEAMVKEKLAALHKM
WDDLESTTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKK
QQMLESQVEVRQKEVEELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLKKRKGNL
MASREIHQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRC
DDIFERSQQVLKDDDNSPSGEGIRQRLADLRRLWAQILEETAKRHGRLEEAHKAQQYYFD
AAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRGLTA
AGHPESERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVV
AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHADAATIAEWK
DGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVE
TLQRMHTTFEHDIQALGTQVRMLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEAC
DGRRVRLLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEI
DARNDSFTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVH
QFGRDAGVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLT
TMELLEVRRQQEEEERRRNPPPAESQTDTASPQQKEGEQVSLNGLPSDQDSPRDNGEGSD
IVNGVAEPSPGGSPSAVRKGKPSQAATLPAKSLDSTPANQMEGLLHRKHEWEGHNKKASS
RSWHNVYCVINNWEMGFYKDIKSASQGIPYHNEIPISLKDAACEIALDYKKKKHVFKLKA
TDGNEYLFQAKDDEEMNSWMQAISSAASSDKTEMTPSSHSTPASSRAQTLPASVALATES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctacagagggcaaccagcatgcctggccccttgtccccagggcctatttttcca
gggtcccactccccagggcccctgtccccttcctctgggcccggcccctctcttgcctcc
agccccggccctgatccgggctactctgctaaacaggctgccttcaactacaaccagctc
gaaggccgttttaagcagctgcaagatgagcgtgaagcggtgcagaagaagaccttcacc
aagtgggtcaactcccacctagccagagtgtcctgcaggatcactgacctctatatggac
ctgagagatggacgcatgctcatcaaactactggaggttctctctggggagaaactgccc
aagcccactaaggggcgcatgcgtatccattgcctggagaacgtggacaaggccctgcag
ttcctcaaggagcagagggtccatctagaaaacatgggctcccatgacatcgtcgacggc
aaccaccgcctcacccttggcctcatctggaccatcatcctccgcttccagatccaggac
atcagagtggagacggaggataacaaagagaagaagtcggctaaagatgctctgctgctc
tggtgccagatgaagaccgcaggatatcccaacgtaaacattcacaacttcagcaccagc
tggagggatggcatggctttcaacgccatcctccacaaacacagacctgacctgatagac
tttgacaagctgaaaaagtcaaatgcccaccacaacctgcagaatgccttcaacctggca
gagcaacacctgggcctccacaagctactggacgtagaggatatcagcgtggaccaccct
gatgagaagtccatcatcacctatgttgtgacctactaccactacttctccaagatgaag
gccctgaaggtggagggcaaacggattgggaaggtgctggacaatgccattgagaccgat
aacatgattcagaaatatgagagtctggcctctgacctcctggaatggattgaacagacc
atcatcatcctcaacaaccgcaggtttgccaactccctagtgggggtgcagcaacagctc
caggccttcaacacctaccgtaccgtcgagaagccgcccaagttcactgagaaaggcaac
ctggaggttctcctcttcaccatccagagcaagatgagggccaacaatcagaaggtctac
atcccgcgggatggaaaactcatctcagacatcaacaaggcctgggagaggctggagaag
tcagagcatgagagggagctggcgctaaggacggagctgattcgtcaggagaaactggag
cagctggcccgccgctttgaccgcaaagccgccatgagagagacctggctgagtgagaac
caacggctcgtctcacaggacaactttggcttcgatctgcaggcggtggaggccgccacc
aagaagcacgaggccatcgagacggacatcggcgcctacgaggagcgtgtgcaggcagtg
ctctccgtggccaaggagctggaggcagagaactaccatgacatcaagcgcgtgacagcg
aggaaggacaacgtgctgcgtctgtgggagtacctgttggagctgctgaaggcccggcgc
atccggctggagatgaacctgggcctgcagagggtcttccaggagatgctttatatcatg
gactggatggatgagatgaagatgctgctgctgtctcaggactatgggaaacacctgctg
ggagtggaggacctgctgcagaagcacactctggtggaggctgatattgccatccaggcc
gaccgcgtcaaagccgtcaacaacaacgctcagaagttcgccattgatgcagagggctac
aagccctgtgacccccaggtgatccgggaccgagtggcccacatggagttctgttacgca
gagctgagccagctggccgccgagcgctgcgcccgcctggaggagtcccgccgcctctgg
aagttcttctgggagatggccgaggaggagggctggatccgtgagaaagagcagatcctg
tcctcggaggactgcggtaaggatctgacgggcaccgtgcgtctgctgagccagcaccgc
gccttcgaggatgagatgatcggccgcgccggccacctgcaacagaccatcaaacaggga
gaggagctggtggccgccgaccacttcggagccgacaagatccgtgagcgcatccaagac
atccaggagcagtgggcggccttggagaggctatctgccgttaggaaggcccggctggag
gaggcctgcaacctgcaccagttccaagctgacgccgacgacatcgacgcctggatgctg
gatgttctccgcattgtgtccagtgccgacgtgggccacgacgagttctccacccaggcc
ctggtcaagaagcacaaggatgtggccgaggagatcgccggctaccgacctgtcatcgac
gccctgcacgagcagtccaaaaccctgcccggggaacagactggctcagaggaggtgcag
gggcgcctgtcaggtatcgaggagcgctataaggaggtggctgagctgacccggctgagg
aagcaggccctacaggatgccctggccctctacaagatgttcagcgaggcggacgcctgt
gaggtgtggatcgatgagaaggagcagtggctcaacagtatggagataccagagaaactg
gaggatctggaagtggttcagcacaggtttgaaagtctggagccagagatgaacagccaa
gcctcccgcgttgccgtggtgaaccagattgctaggcaactcatccacagtggtcacccc
agtgaaaaggagatcaaagcccaacaggacaaactcaacaccagatggagccagttccgt
gacctagttgacctgaagaaagactccctcaactcagctctgggtgtacagaactaccac
ctggaatgtaacgagaccaagtcgtggatccgcgagaagaccaaggtgatcgagtccacc
caggagctgggcaatgacctggccggggtcatggccctgcagcgcaaactcaccggcatg
gagcgtgacctgaccgccatcgaggacaagctaggagaactggggaaggagggggagcgc
cttgcagccgagcaccctgaccaggcccagggcatcatgggtcgtctgggggagatcaca
ggagtgtgggacgagatgaagggcaccctgaagaaccgtgaggagtccctgggcgaggca
agcaagctgcagcagttcctccgggagctggatgacttccagtcatggctgtccaagaca
cagacggccatcgcttcagaagacatgcccaacacactgacggaggccgaaaagctgcta
gcgcagcacgagggcatcaagaacgagatccgaaactatgaagtggactaccagaagatg
agggacatgggggaaatggtgacccagggccagacggacgcccagtacatgttcctaagg
cagaggctgcaggccctggacacaggctggaacgagctgcacaagatgtgggagaaccgt
cagaacctgctgtcccagtcccatgcccaccagctgttcctcagggataccaagcaggct
gaagccttcctcaacaaccaggagtacgtgctggcccatactgagatgcccacgactctg
gagggggcagagggagccattaagaagcaggaggacttcatgaccactatggacgccaac
gaggagaagatcaatgccgtggtggacaccggacgcaggctggtcagtgacaaaaacatc
aacgctgaccgcatccaggagaaagtggactctatcgatgagagacataagaagaaccgc
ttggcggccagtgagcttctctgtaagctgaaggataacagagacctacagaagttcctt
caggactgccaagagctgtccctgtggatcaatgagaagatgctcacggctcaggacatg
tcgtacgacgaagccaggaacctccacagcaaatggctcaaacaccaggccttcatggcc
gagctgcagtccaacaaggagtggctggacaagatcgagaaggacgggatgcagctgata
gctgagaagccggagaccgaggccatggtgaaggaaaagctggcagcactccataagatg
tgggatgaccttgagtccaccacccagactaaggccaagtgtctgtttgacgccaacaag
gccgagctgttcacccagagctgtgccgacctggacaagtggctggtgggagtggatgga
caaatccaatcagacgactacggcaaagatctgaccagcgtcaacatcctgctcaagaaa
caacagatgctggagagccaggtggaggtgcgtcagaaggaggtggaggagctgcagagc
caggcccaggtcctcagccaggaggggaaggacacagatgaggtggacggccagcgccgc
atcgtggagaagaagttccagcagctgctagacccactgaagaagaggaagggaaacctc
atggcctcccgcgagatccaccagttcaacagagacgtggaggacgagatcctctgggtt
gaagagagaatgccactggcaacatctacagaccacggaaacaacctgcaaacagtccag
ttactcatcaagaagaaccagaccctgcaaaaggagatccagggccaccagccgcgctgt
gatgacatctttgagcggagtcagcaggtgctgaaggatgacgacaacagccccagcggc
gaggggatccgccagcggctggccgacctgcggcgcctgtgggcccagatcctggaggag
acggccaaacgccatggacgcctggaggaggcccacaaggcccagcagtactactttgat
gctgccgaggctgaggcctggatgagcgagcaggagctctacatgatgtcagaggagaaa
gccaaggatgagcagagctccgtggccatgctgaagaagcaccagatcctggagcaggct
gtggaagactatgctgagactgtccaccagctctccaagaccagcaggggcctgacggcc
gccggacacccggaaagtgaacggatcggcatgcgtcagtcccaggtggataagctgtac
gcggggctcaaggacctgtcggaggagaggagggggaagctggacgagaggttccgtctt
tttcagctcaacagggaggtggatgacctggagcagtggatcgctgaaagggaggtggtg
gctgggtcacatgagttgggacaggactatgaacatgtcacgatgcttcaggagcgtttc
cgtgagtttgctcgcgacacgggcaacattggtcaagagcgtgtggacactgtcaaccag
ctggcggacgagctcatcaactcgggccacgccgacgcggctaccatcgccgagtggaag
gacgggctgaatgaggcgtgggccgacctgctggagctgattgacacacgcacgcagatc
ctggcggcgtccttcgagctgcataaattctaccacgacgccaaggaaatcctcaaccgc
atcctggacaaacacaagaagctgcctgaggagctgggccgagaccagaacacagtggag
accctgcagaggatgcacaccacctttgaacacgacatccaagccctggggacacaggtg
aggatgttgcaggaggatgctgtgcgcctgcagtctgcctatgccggagacaaggctgat
gacatccaaaagagagagggtgaggttttggaggcctggagaacactgctggaggcctgt
gacggccgcagggtcagactgctcgacaccggcgacaagttccgtttcttcagcatggtc
cgagacctcatgctctggatggaggacgtcatccgcctaatcgaggctcaggagaagccc
agggacgtgtcatctgtggagctcctgatgaacaaccaccagggcatcaaggctgagatc
gacgcccgtaacgacagctttaccaactgcatcgagctgggaaagtccctgttggcacgg
aaacactacgcattagaggagatcaaagagaagttactacagttgacagacaagaggaaa
gacatgattgacaagtgggaggacagatgggagtggcttagattggttctggaggtgcac
cagtttggaagggacgcgggtgtggccgagtcgtggctcctgggacaggagccgtacctg
tccagcagggagatgggtcagaatgtggatgaagtggagaaactcatcaagagacacgag
gcctttgagaagtcagctgccacctgggaagagcggttctctgcgctggaacggctgact
acgatggagttactggaagtgagaagacagcaagaggaggaggagaggaggagaaatccc
ccacctgcagagtcccagacggacactgcatcgccacagcagaaggagggtgagcaggtg
tctctgaatggactgccatcggaccaggactcccctcgggacaatggggagggaagtgac
attgtaaatggggtggcggagcccagcccaggcgggtcgcccagtgcagtacgcaagggc
aagcccagccaggctgccacgctcccggccaagtccctggactcaaccccagccaaccag
atggaaggcctcctgcaccgcaaacatgagtgggagggtcacaacaagaaggcatccagc
agatcctggcacaatgtgtattgtgtgatcaacaactgggaaatgggcttctacaaagac
attaagagtgccagccagggcatcccctatcacaacgagatccccatcagcctgaaggac
gctgcgtgtgagatcgccctcgattacaagaagaagaagcatgtgttcaaactgaaagct
acagatgggaatgagtatctcttccaagccaaagatgacgaggagatgaactcgtggatg
caggccatctccagtgctgcgtcctctgataagaccgagatgacccccagcagccatagc
acccccgcctccagccgagcccagaccttgcccgcctctgttgccctggcaaccgaatcc
agcccaggcaagcgcgagaaagacaaagaaaaacgcttcagccttttcagcaaaaagaag
tag
DBGET
integrated database retrieval system
