Salvelinus namaycush (lake trout): 120046657
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Entry
120046657 CDS
T07522
Name
(RefSeq) nucleolar RNA helicase 2-like isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120046657
03036 Chromosome and associated proteins [BR:
snh03036
]
120046657
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120046657
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Helicases
120046657
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120046657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Gly_acyl_tr_C
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120046657
NCBI-ProteinID:
XP_038847978
UniProt:
A0A8U0QQ89
LinkDB
All DBs
Position
Sna4:57929095..57950306
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AA seq
747 aa
AA seq
DB search
MPSKIIFETEDIGMECELDISAGSTTPKKVKEKKTKEGKKIKKHKTVVEEEPDCEPPVPK
KKKKEKVDKANGDVNKSIDVNGNIESHLKNNTSYSNEESADNDKATEQKKKTSEEEVVRV
LHKTPKLIAQTNGHSTTTTPTQSSEDSSSDSEKEIETPEQKEGAFSNFKISPNTIKLLQA
RGISFLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKIQNDPDDKRRGRAPKV
LCLAPTRELAIQVAKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSGIDFLVGTPGRIKDHL
QNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSESNPQTLLFSATCPPWVY
VVAKKYMRPTYVHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIV
FCETKKDANELSMNTSIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDI
PEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRV
GVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVDALAAALAHISGATA
LEQRSLLNSDAGYTTMTMNCSQELHNIGCAWRGLKEQLGEEIDDAIRGMTFLKGKMGVCF
DVPADKVKEYQDAWQDGRRWQLSIATELPELEEKQRMGGDRGYGRSFGGRGGGGRGGGHG
FRNGGGGGNWRGGGGSHKRSFSSAFDY
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaagattatttttgaaaccgaagacatcgggatggaatgtgaactggacatt
agtgcgggcagtacgacgcccaaaaaagtaaaggagaagaagaccaaggaggggaagaaa
atcaagaaacataaaacagttgttgaagaggaacctgactgtgaacctcctgttcccaag
aagaagaagaaagaaaaagtggacaaagcaaatggggatgtgaacaaatccattgatgtt
aatgggaatattgaatcacatttgaagaacaacacatcttattccaatgaggagtctgca
gacaatgacaaagcaactgagcagaaaaagaagacgtcagaagaagaagttgtcagagtg
ttgcataagactcccaagctgatcgcacaaactaatggacattccacgacgacaactcca
acacaatcaagcgaagactccagcagtgacagtgaaaaagaaattgagacaccagaacaa
aaagagggagccttttcaaacttcaaaatctcccccaacaccatcaaactacttcaagca
cgaggcatatctttcctctttgacatccaaacccaaaccttcaattcagtgtatgaggga
aaggatgtaattggtcaggcaagaacaggcactggcaaaacattagcttttgccattccg
ctgatcgagaaaatccaaaatgacccggatgacaagaggcggggcagagccccaaaggtt
ctgtgccttgctccaacgagagaattggctattcaagtagccaaggatttcaaggacatg
acaaagaaactgtctgttacctgtttctatggtgggagctcctacaaccctcaacttgat
gcaatccgcagtggcatcgatttcctagtgggaactccaggtcgtatcaaggaccatcta
cagaataacaaactggacctgtctcaattgaagcacgttgtattagatgaagtggaccaa
atgcttgatatgggctttgcagaacaggtggaggagatactttctgcatcttaccaaaaa
gactctgagagcaatccccagaccctgctcttctctgccacatgcccaccatgggtgtat
gttgtggcaaagaagtacatgaggccaacctatgtgcatgtggacctcattggcaaaaag
acccagaaagctgccaccacagtagagcaccttgccattgcgtgtcactggtctcagagg
gctgcagtcattggggatgtggtccaggtgtacagtggcagccacggccgtaccatcgtc
ttctgtgagaccaagaaggatgccaacgagctgtcaatgaacacctccataaaacagagt
tcccagtcacttcatggggacattcctcagaagcagagggagatcacattgaaaggcttc
agaagtggcacctttgaggtcttggtggccaccaacgttgctgctcgtgggttggacatc
ccagaggtagacctggtcgtgcagtgctcacccccaaaggatgtggagtcatacattcac
cggtcaggtcgcactggtagggctggcaggacaggcgtctgcatctgtttctaccaacgc
aaagaggaagaccagctccgatacgtagagcagaaagcaggcatcacatttaagagagtt
ggagtgcccactgccaatgacatcatcaaatcctccagtaaagacgcagtgaggttttta
gactctgtgcctccccaagccattgagtacttccgtgtgtctgctaccaagctgattgag
gagcgtggggccgtggatgccctggctgccgccctggcacacatatcaggtgccactgcc
ctggagcagaggtccctcctcaactctgacgctggctacaccacaatgacaatgaactgc
tcccaggagctgcacaacattggctgtgcttggcgtggtctaaaggagcagctgggagag
gagattgacgatgcgatccgggggatgaccttcctcaagggcaaaatgggagtctgtttt
gatgttccagctgacaaagtaaaggagtaccaagatgcatggcaggatggtaggcgttgg
cagctgtcaatcgccacagagctccctgagctggaggagaaacagcgcatgggtggtgac
cgtggatacggacgctccttcggtggacgtggtggtggaggacgagggggtggccatggc
ttcagaaacggcggcggtggtggcaactggagaggaggtggaggcagtcataaacgcagc
ttcagcagtgcatttgattattaa
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