Salvelinus namaycush (lake trout): 120046838 Help Entry 120046838         CDS       T07522                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06236   collagen type I alpha Organism snh  Salvelinus namaycush (lake trout) Pathway snh04510   Focal adhesion snh04512   ECM-receptor interaction snh04518   Integrin signaling snh04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:snh00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120046838    04518 Integrin signaling     120046838  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120046838   09142 Cell motility    04820 Cytoskeleton in muscle cells     120046838  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:snh00536]     120046838 Glycosaminoglycan binding proteins [BR:snh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120046838 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  120046838 NCBI-ProteinID:  XP_038848313 UniProt:  A0A8U0UD30 LinkDB All DBs Position Sna4:78500164..78537625 Genome browser AA seq 1460 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT VMCDEVICEDTTDCADPIIPDGECCPICPDDSETEGPQGPVVPETEGPEGGVGPKGDDGP EGVPGNDGMDGQPGLPGPPGPPGPPGLGGGNFSPQMHHGYDEKSSGGQAQQGPMGPMGPR GLSGPPGNTGPPGHHGPPGEPGEPGGAGPMGQRGTMGPPGKNGDNGEPGRSGRPGERGSA GPQGARGTPGTPGLPGIKGHRGFNGMDGAKGDGGPAGPKGEGGSPGSSGNPGAMGARGLP GERGRPGPAGPSGGRGNDGNSGPAGSPGPTGPSGSPGFPGGAGAKGETGPQGGRGSDGPQ GSRGEPGNPGPAGAAGPSGAPGSDGQSGGKGATGAVGISGAPGFPGSRGPAGPPGAGGGP GPKGNHGEQGAQGSKGEPGVKGEPGSSGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGER GMPGMRGFPGSDGAAGGKGGPGERGANGPMGAQGATGEAGRPGEPGMPGSKGMTGSPGSP GPDGKVGPAGITGNDGRSGPPGSSGSRGQPGVMGFPGPKGPAGDSGKPGERGEAGAVGGV GAPGKDGDSGAPGPQGPAGGQGEKGEGGPAGPNGFQGLPGTQGATGEPGKAGDQGVPGEV GGPGPSGSRGDRGFPGERGGIGSVGPSGPRGPNGSPGNDGARGETGVAGAPGGMGAPGLQ GMPGERGSGGNSGAKGERGDGGPKGADGGPGKDGMRGMTGPIGPPGPTGAHGEKGEGGLG GPPGPAGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGETGNNGPKGDAGAPGPGGPV GAPGPQGPAGNAGTKGTRGAPGPPGASGMPGPGGRVGPPGGSGAPGPPGPPGPSGKEGQR GGRGETGHAGRPGEAGAAGPPGPSGQSGAKGNDGPMGAPGTPGPGGIGGQRGIVGGPGGR GTSGSPGVPGQAGEPGKQGPGGPVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVAGRD GPPGPKGDRGENGNAGSPGAPGPPGAPGPSGASGKTGSRGESGPAGPAGPNGPAGGRGGL GPAGARGDKGEAGEGGERGHKGHRGLSGMPGLPGPAGSPGESGPAGLNGPSGPRGPHGSS GSTGKDGMNGLPGPIGPPGPRGRNGEMGPAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKG PDPMRGGGGYHYRADEPDMMNDRDMEVDTTLKSLSQKVENIRSPEGTQKNPARMCRDIRM CHPEWKSGQYWVDPNQGSPLDAVQVFCNMETGETCVYPSQDTVPMKNWYTSKNIREKKHI WFSESMDNGFQFQYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSVAYMDKGTGNL KKALLLQGSNEIEIRAEGNSRFTYTVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAP MDVGAPDQEFGVEVGPVCFV NT seq 4383 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgttgctgagcgcaacagtactattggcg agaggtcaaggagaggacgatagtggattcggcagctgctcgttggatggccaacagtac aacgataaggatgtgtggaaacctgaaccctgccagatctgcgtctgcgacagcggaacc gttatgtgcgacgaagtgatttgtgaggacacaaccgactgcgccgaccctatcatcccc gacggcgaatgctgtcctatctgccccgatgactccgagacagagggtccccaggggcca gtagtgcctgagacagagggaccagagggaggagttggccccaagggtgatgatggtcct gagggtgttcccggtaacgacggcatggacggccagcctggccttcccggccccccaggc ccccctggacctcctggccttggcggtggaaacttctctcctcagatgcaccacggttat gatgagaaatccagcggcggccaggcccaacagggaccaatgggcccaatgggtccccgt ggtctctctggcccaccaggaaacactggtccccccggtcatcatggcccccctggcgag cctggtgagcctggcggtgctggtcccatgggtcaacgtggtacaatgggccccccaggc aagaacggagataatggtgagcctggcaggtctggtcgccccggtgagcgtggctccgcc ggccctcagggtgctcgtggaacccctggaactcctggcctccccggcatcaagggacac agaggtttcaatggaatggatggtgccaagggagacggtggcccagctggccctaaggga gagggtggttcccctggatccagcggtaaccccggtgctatgggtgctcgtggtcttcct ggtgagagaggccgccccggacccgctggcccttctggtggccgtggtaatgatggtaac tctggtcctgctggatcccctggacccactggcccatctggttcccctggattccccgga ggcgctggagctaagggagagaccggtcctcagggaggccgtggctcagacggaccccaa ggatctcgtggagagcccggtaaccctggacccgctggtgctgctggaccctctggtgcc cccggaagtgatggccagtcaggaggcaagggtgccactggtgctgttggtatctctggt gctcctggtttcccaggatcccgtggccccgctggacctcctggagctggtggtggcccc ggccccaagggtaaccatggtgagcaaggagcccaaggctccaagggagagcccggtgta aagggagagcctggttcttctggtcctggcggcccccccggcccatctggggaggaggga aagagaggtgcccgtggtgagcctggtggagctggtggtgttggaccccctggggagcgt ggtatgcctggtatgcgtggtttccccggctctgatggagctgccggtggcaagggtggc cctggtgagcgtggagccaatggaccaatgggagcccaaggtgccactggtgaggctggt cgccccggggagcctggcatgcctggatccaagggtatgactggtagccctggcagccct ggccccgatgggaaagttggccctgctggtatcactggaaacgatggtcgttccggaccc ccaggctcctctggatccagaggtcagcctggagttatgggattccccggacccaaagga cctgctggtgacagtggaaagcccggtgagagaggagaagccggagctgttgggggtgtt ggtgcccctggcaaagatggtgactctggtgctcccggaccccaaggccctgctggaggt caaggagagaaaggagagggtggccccgctggtcctaacggattccagggtctgcctgga actcagggagctactggtgagcctggcaaggctggtgatcagggggtgcctggtgaggtt ggaggtcccggccccagtggatccagaggtgacagaggtttcccaggtgagcgtggtggc atcggctctgtcggcccctctggaccccgtggacctaatggttctcctggtaatgatggt gctaggggtgagactggagttgctggtgcccctggcggtatgggagccccaggtctgcaa ggaatgcccggagagcgtggttcaggtggcaactccggtgccaagggagaacgaggtgat ggtggccccaagggagccgacggtggcccaggaaaagacggcatgcgtggtatgactgga cccatcggaccccccggacccactggtgctcatggagagaagggtgagggtggtcttggc ggcccccctggtcccgctggaggtcgcggttcccctggtgagcgtggtgagcatggtgcc cctggacctgctggatttgctggaccccctggtgctgatggtcagcctggcaacaaggga gagactggtaacaacggccccaaaggtgatgctggtgctcctgggcccggtggaccggtt ggtgctcctggacctcagggtcctgctggtaatgctggtactaaaggaactcgtggtgcc cctgggccccctggtgcttctggtatgcctggtcctggtggaagagttggccctcctggt ggaagtggagcccccggacccccaggcccccccggcccctctggtaaagagggacagagg ggtggacgtggtgaaactggtcacgctggtcgccccggtgaggctggagccgccggaccc ccaggaccctcaggacaatctggagccaagggtaatgatggcccaatgggagccccagga acccccggacccggaggtattggtggacagcgtggtattgtggggggcccaggaggaagg ggaaccagcggtagcccaggagttccaggacaagctggggagcctggtaagcagggacct ggcggccccgtcggtgagcgtggatcccctggccccatgggaccccctggcctgtctggt gcacccggtgaggctggtcgtgagggttccactggtcacgatggtgttgccggtcgcgat ggaccccctggtcccaagggtgaccgtggtgagaatggtaatgccggttcccctggtgct cccggacctcccggtgcccccggtccctctggtgcttctggcaaaactggtagccgcgga gagtctggtcctgctggtcccgctggccctaacggtcctgctggtggtcgtgggggtctt ggccctgctggtgctcgtggagacaagggagaggctggagagggtggagagagaggccac aagggacacagaggtttgagcggcatgcccggacttcctggacccgctggatcccctgga gagtctgggcctgctggacttaacggaccttctggaccccgaggaccccatggttcttct ggctctactggtaaagatggcatgaacggtctgcctggacccatcggaccccccggaccc cgtggtcgcaacggagagatgggacctgctggtgctcctggttctcctggtctgcccgga cccccaggtcccgctggtggcggcttccatgtcgcaccgatctacaaccaggagaaggga cctgaccccatgcgaggaggaggaggataccactaccgtgctgacgagcctgacatgatg aacgaccgtgacatggaggtggacaccaccctgaagagcctcagccagaaggtggagaac atccgcagccctgagggaacccagaagaaccccgcccgcatgtgccgtgacatcaggatg tgccaccctgaatggaagagcggccagtactgggtggaccccaaccagggctctcctctg gatgctgtccaggtcttctgcaacatggagactggagagacctgtgtctacccatcccag gacaccgtccccatgaagaactggtataccagcaagaacatcagggagaagaagcacatc tggttctcagagtctatggacaacggcttccagttccagtacggtagcgagggctccaac ccagaggacgtcaacatccagctgaccttcatgcgcctgatgtccaacgaggcgtcccag aatgtcacgtaccactgcaagaacagcgtggcctacatggacaagggcacgggcaacctg aagaaggccctactgctccagggatccaacgagatcgagatcagagctgagggcaacagc cgcttcacatacaccgtcagcgaggacggctgcacgtcacatactggcacatggggcaag acagtcatcgactacaagacatcaaaaacatctcgcctgcccatcattgacatcgctcct atggacgttggtgcacctgatcaggagtttggcgtggaagttggccctgtctgcttcgta taa

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