Salvelinus namaycush (lake trout): 120047354
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Entry
120047354 CDS
T07522
Name
(RefSeq) DNA-binding protein RFX7-like
KO
K09175
DNA-binding protein RFX7
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120047354
Transcription factors [BR:
snh03000
]
Eukaryotic type
Other basic domains
RF-X
120047354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX_DNA_binding
Pox_D5
Motif
Other DBs
NCBI-GeneID:
120047354
NCBI-ProteinID:
XP_038848809
UniProt:
A0A8U0QVN5
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All DBs
Position
Sna1:64932763..64945230
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AA seq
1350 aa
AA seq
DB search
MSSSRTQQMHAFNWIRNHLEEHPETSLPKQEVYDEYKSYCDNLCYHPLSAADFGKIMKNV
FPNMKARRLGMRGKSKYCYSGLRKKAFVHMPSLPNLDLHKTGDGCEVLEASGQLCSAEEE
VRSAACGLVCEWAQKVLSCQFDAVEDLARFLLNSHYIGTKSVAALTVMTGTPTGVKTPLP
SSAFAPTAEAHSFQSQVKTLPSPSIDAKQQLQRKIQKKQQEQMLHSPLPGEAQPRRADGG
TPGVGSITCRSPALLSPHPTIGIMVAAVPSPITVQRSRQLMSPSPVGTSEGKILPVNFQV
VTQSMQPVKCPKTPQNIPASPVGDRSARHRYAQILPKPSATSAITLRSPPTLLITNSPIK
TVMQPTPHISSVNVVKMTTISLAPNCSTTTTLTNTTLRPASAGMGSTVALEESRPSPRAR
SGSAAPILSPLARSGRATTTPTIDIKMMEGEAISEGSKALGASRLTMTQEAAGGQRAGGA
VPRAASVPTPHTKGYLGLEAMAGTKCNVKSYLSNNPVAATAGSNNNTNNESTLYLTVSNQ
NTSTTLSPNGGTVATSLIASKSPRKRPGVGLESYPTPVKRVFISQQPHGGSDGYRHGIGA
GVKKLPRAGTPVRPESAPAIGKNTVKLNSTVPTRILSLSDSPIGTRGFQTVVKPQNSVQR
RDTPTTMDTSSIGNVSAPAGHARIQHQQHMTGNMQSMPNSSALLEQSAVSDLRNTMWVGG
QLEGGKQQQGYAQQITDHKQASTPVMEPLAMMCQAPASSQLSMQTDMDYFHFNDDDMTQD
SIVEELVQMEEQMKLNSSLQAFGADVTVQGHQSIIQGNMMSSNQTVTPYYQSVHSSTTPV
HTPTPTPTPTSTSEMMGGGQGLTRESPCSRMAPTTPVDSALGSSRHTPIGTPHSNCSGSV
PPSPVECRNPFAFTPINSSITGYHDGSIVSSSPVKPMQRPMATHPDKAKLEWMNNGYNNS
GGNSINGISILPSYQDLVDDHFRKPHAFAIPGQSYQSQTRHYGRLTPISPVQQQSASMAN
LNKQEGFAVPAPLDNKATSTSSAGGTFRCRSVSPAVRQRNLSGNQGLQNIPRTVVSPFTS
PVTPEMINIFANSHGDVSSMAQRSQSVPVNVMMQTEVLPMQGQTNSKKITNVLLSKMDGD
SDDAVRGLGINNLPSNYTARMNLTQILETTPSFPSSANHQTLMTSNAQNAYEFQKPGYLM
KNSRNEQMSLSAGDSQAQSATGEEQHQQSQPMLLAQKLQQQLDFSTTVKDLLADGCLTPG
NRLVRQVSELNAVGSDFRLTSDLSSSINDLNNLDTNLLFDPNQQQGQYEDSTLEELKNDP
LFQQICSETANSNGFDWLESKDQPTVGLMG
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaagccgcactcagcagatgcacgcattcaactggatccgcaatcacctagag
gaacacccagaaacctctctgcccaaacaggaggtctatgacgagtacaagagctattgt
gacaatctctgctaccacccactgagtgcggcggactttggaaagatcatgaaaaatgta
tttccaaacatgaaggcacgtcgacttggcatgagaggcaaatcaaaatactgctatagt
ggactgaggaagaaagcctttgtccacatgccatctttacccaacctggatttacataaa
acaggggacgggtgtgaggtgctggaggcctcaggtcagctgtgcagtgcggaggaggag
gtgcgctctgcggcctgtggcctggtgtgtgagtgggcccagaaggtgctgagctgccag
tttgatgctgtggaggacctggctcgcttcctcctcaacagccactacatcggcaccaaa
tctgtggcagccctcacggtcatgactggtacaccaacaggagttaaaacgccactccca
tcctcagcattcgcaccaacagctgaagcccactccttccagtcccaagtgaagaccctg
ccctctccctccatcgatgccaagcagcagctccagcggaagatccagaagaagcagcag
gagcagatgctgcactcccccctccccggagaggctcagcccaggcgggctgacgggggc
acgcctggggtcggctccattacctgtagaagcccagccctgctctccccacatcccacc
attggcattatggtagctgcagtccccagccccatcacggtacaaaggagcaggcagctg
atgtcccccagtcctgtgggaacatcggagggcaagattctgcctgtcaacttccaagtg
gtgacccagtcaatgcagcctgtcaagtgtcccaagacccctcagaatatcccagccagc
cctgtgggggaccgctctgcccggcaccggtatgcccagattctgcctaaaccctcagcc
accagcgccatcaccctgcgctcgccccccaccctgctcatcaccaacagccccatcaag
accgtgatgcagcccacaccccacatcagctctgtcaacgtggtcaagatgaccaccata
tccctggcacccaactgcagtactacaaccaccctaaccaacaccaccttaaggcctgcc
tctgctggcatgggcagcactgtagccctggaggagagcagacccagcccacgggccagg
agtggctctgcagcccccatcctgtcccccttagccaggtcaggccgggccaccaccacc
cctaccatcgacatcaagatgatggaaggtgaagccataagtgagggcagtaaggccctg
ggtgctagcaggcttactatgactcaggaagctgcagggggccagagggctggaggagct
gtaccaagggctgccagtgtgcccacgcctcacactaaaggctacctgggactggaggca
atggctggaaccaaatgcaatgtaaagtcctatttgagcaacaaccctgtggcagctaca
gctggtagcaataataacaccaataacgaaagcactttgtatttgacggtctccaatcag
aataccagcaccactctgtcacccaatggtggcactgttgctacatcactcatcgcctcc
aagagccccaggaagcgcccaggcgtcggcctagagtcttatcccacgcctgtcaaaagg
gtcttcatctcccagcagcctcatgggggttccgatggttacagacatgggattggtgca
ggagtgaagaaactccccagggcaggaaccccggtcagacctgaaagtgcaccagccatt
ggtaaaaatactgtgaaactgaactccactgtcccaactcgaatcctgtcactctctgat
tcccctatcggaaccagaggcttccagactgttgtcaagccacagaactccgtgcagaga
agagacactccgaccaccatggacactagcagcatcggcaacgttagtgccccggctggt
catgcacgaattcagcaccagcagcacatgacgggtaacatgcaatccatgccgaacagc
tctgccctactggagcagtctgctgtgagtgacctaaggaacaccatgtgggtcgggggc
cagcttgagggaggtaagcaacagcagggctacgcccagcagatcacagaccacaagcag
gcatccacaccggtcatggagcccctggccatgatgtgccaggccccagcctctagccag
ctctccatgcagacagacatggactacttccatttcaatgatgacgatatgacccaggac
agcattgtggaggagctggtgcagatggaggagcagatgaagctcaacagcagtctgcag
gccttcggagctgatgtgacggtgcaaggtcatcagtctataatacagggcaacatgatg
tcctccaaccagacagtgaccccttactaccaatcagtacacagcagcaccacccctgtc
cacacccccacccctaccccaactcccacatccacctctgagatgatgggaggaggccag
ggcttgacccgggagagtccctgctcccgcatggcccccaccaccccggtggacagtgcc
ctggggagcagccgacacacccccatcggcactccacactccaactgcagcggcagcgtg
ccccccagccctgtggagtgcaggaacccctttgcctttactcccattaactctagcatt
acaggctaccacgacggcagcattgtctccagcagccccgtcaagcctatgcagaggccc
atggctactcacccagacaaggccaaactggagtggatgaacaatggttacaacaacagc
ggtgggaactccatcaacggcatcagtatcctccccagctatcaggacctggttgacgac
cacttccgaaagccccatgccttcgccatccctggccagtcctatcagtctcagacgagg
cactacggccgcctgacacccatctctccggtgcagcagcagtcagccagtatggccaac
ctgaacaagcaggagggcttcgctgtgcccgcccctctggacaacaaggccaccagcaca
tcctcagcaggcgggaccttccgctgtcgtagtgtgagccctgccgtgcgacagcgaaac
ctgagtggcaaccagggcctgcagaacatcccccgaacagtggtgtcccccttcacctcc
cccgtgacccccgagatgatcaacatcttcgccaacagccatggggacgtcagcagcatg
gcacagaggagccagtctgtgcctgtcaatgtgatgatgcagacggaggtgctgccaatg
cagggccagaccaacagcaaaaagatcaccaacgtgctcctgagcaagatggatggggac
agtgacgacgcggtgcggggcctgggcatcaacaacctcccgtccaactacacagcccgc
atgaacctcacccagatcttagagaccacgcccagcttccccagcagtgccaaccaccag
actctgatgacttccaacgctcagaatgcgtacgagtttcagaagcctggttacctcatg
aagaactctaggaacgaacagatgagtctctcagcaggtgacagccaagcacaatcagct
actggagaagagcagcatcagcagagccagcccatgctgctggcccagaaacttcagcag
cagctagatttcagcaccaccgttaaagacctcttagcagacggctgccttactcctggc
aatcggctcgtgagacaggtgtcagaactcaatgctgtggggtctgattttcgactgacc
tcagatctttccagtagcatcaatgacctgaacaatttggacacaaaccttctgtttgac
cccaatcagcagcagggacaatatgaagactctacactggaggaactgaagaatgatccg
ctgttccagcagatttgcagcgagactgcgaattccaatggatttgattggctggaaagt
aaagaccagcccacggtcgggttaatgggttaa
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