Salvelinus namaycush (lake trout): 120047445
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Entry
120047445 CDS
T07522
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120047445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120047445
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
120047445
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120047445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
AAA_16
ATP_bind_1
AAA_18
MMR_HSR1
AAA_22
CbiA
Motif
Other DBs
NCBI-GeneID:
120047445
NCBI-ProteinID:
XP_038848901
UniProt:
A0A8U0QUK3
LinkDB
All DBs
Position
Sna5:24408445..24414630
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AA seq
441 aa
AA seq
DB search
MVTEGPEKTGEEGVVAGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSELNRN
KKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNAHTALEQMRRQAERDNE
RGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSGVSVPGTMSALCIERPA
DVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEENRKASVGGCIINTCG
WVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERSKDC
RRESRDEKIREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQLK
LVPVTPGRDLTHHVLSVSCADEGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMTVLSP
APRPLPRHTLLIMDIRFIDLK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgagggcccagagaagactggtgaggagggagtggtggctggtggcgggggg
acgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggccggggagaag
gtgcaactggagctgctcacaggattggcagaggtctttggctctgagctcaaccgcaac
aagaagtacacgtttggaccaggttccaagattgctgtgttcacctggcagggctgtagt
gtttctctctcggggaagacagaggtggcgtacatatcaaaggacacacccatgctgctc
tacctgaacgcacacactgcactggaacagatgagacgacaggcggagagagacaacgag
aggggaccacgggtaatggtggtggggcctacagatgtggggaagtcaacggtgtgcagg
ctgttgctgaactacgctgtcaggctgggcaggaggcccacactggtggagctggatgtg
ggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgagcgtccggct
gacgtggaggaggggtactccgtacaggctccgctggtctaccactttggttccaccact
ccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaagtgttctcc
cagcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaacacctgtggc
tgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttccaggtggat
gtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggacctaccgcac
ttcgtccgagttgtgctgctacccaaatccggaggggtcgtggagcgctccaaagactgc
cggcgtgaatctcgggacgagaagatccgggagtacttctacggttttcgcagtgccttg
ttcttccctcacgctttcgacgtgcgcttttctgatgtgcggatctacaaaatcggagcg
ccttccatcccggactcatgcctgccgcttggcatgtcgcaggacgacacccagctgaag
ctagtccctgtgacgcccggtcgtgacctcacacaccacgtgctgagcgtaagctgtgcc
gatgagggggaggagggggctggaggggtgcgcaggggtgtgctggagagcccggtgtgt
gggttcattgtggtgactaacgtagacacacaggcacaggtgatgaccgtgctctcgccc
gcccccagacccctccccagacacacactgctcatcatggacattcgcttcatcgacctc
aaatag
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