Salvelinus namaycush (lake trout): 120047508
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Entry
120047508 CDS
T07522
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120047508
03036 Chromosome and associated proteins [BR:
snh03036
]
120047508
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120047508
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120047508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451_C
Zf-C2H2_ZNF451
zf-met
Stm1_N
LIM
zf-C2HE
zf-C2H2_15
DTHCT
zf-C2H2_ZN142
DUF7128
Motif
Other DBs
NCBI-GeneID:
120047508
NCBI-ProteinID:
XP_038848966
UniProt:
A0A8U0QQZ8
LinkDB
All DBs
Position
Sna1:complement(65200387..65214141)
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AA seq
767 aa
AA seq
DB search
MEGEVVSIETAQVEGLQDSGEGAELLQIAEAALMEGGVAPQEVMGNVEMMVMDTLDSTLD
PALLQMKTEVLEGGGTVTVTGGDEGQIITLQVVNMEGNMEQTSAALGLGQLQLVQVPVTT
ATVEELQASFVDASAGNTEAEPVICHTLPLPEGFQVVKVGANGEVETVEQEELQAAQDEL
QVIHGEEEEEEAEPQVEDQTWSKDPDYQPTAGLRKVKKGKKSRLRYGEGERDMDVSVYDF
EEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSH
TDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDCDMAFVTSGELVRHRRYKHTFE
KPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYE
CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFMEMGRK
CRYCDAMFHERYALIQHQKSHKNEKRFKCDQCDYCCRQERHMIMHRRTHTGEKPYACSQC
EKTFRQKQLLDMHFKRYHDPNFIPTAFVCSKCGKTFTRRNTMLRHAENCNGENTGDENGT
PPKKGRRGRKRKMRSRRDDDDDDTEPELDDIEEEEEELLAEIEVEQEPPVVPVPAPVGPP
AKRKRGRPPKAKPAPTAAIIRVEDETTGEVDDIIVKKEMKAEQASQEEEAVEDEEPAVEV
EHAEGEPDSQVESFQGEEVVQEVALSVTEAPPNGDLTPEMILSMMDR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaagtcgtttccattgagaccgctcaggtcgagggtctccaggacagtggg
gagggagcagagctgctccagattgcagaggctgccctgatggaggggggtgtggcaccc
caagaggtgatggggaatgttgaaatgatggtgatggacaccctggactcgacccttgac
cctgccctgctacagatgaagactgaggtccttgaagggggcggcacagtaacggtcacc
gggggagacgagggacagatcatcaccctgcaggtggtgaacatggaggggaacatggag
cagacgagtgcagcgctggggcttggacagctgcagctggtgcaggtccctgtcactaca
gccaccgtggaagagctccaggccagcttcgttgacgcctcagcaggcaatactgaggca
gagccagtgatctgccacaccctccctctgcccgagggcttccaggtggtgaaggtgggg
gcgaatggagaggtggagacagttgagcaggaagaactgcaggcagcccaggatgagctc
caggtgatccatggggaggaggaggaggaggaagctgagccccaagtagaggaccagacc
tggtcaaaagacccagattaccaaccaactgctggcctccgcaaggtgaagaagggcaag
aagagccgcctgcgttacggggagggggagagagacatggacgtgtctgtgtatgacttt
gaggaggagcagcaggaggggatgctctctgaggtcaatgctgagaaggttgtgggcaac
atgaagccgcccaaacccactaagataaaaaagaaaggtgtgaagaagacgttccagtgt
gagctgtgtagctacacctgcccccggcgctctaacctggaccggcacatgaagagccac
acagatgagaggccacacaaatgccatctatgtgggagggccttcagaacggtcacactg
ctgaggaaccacctcaacacacacacaggcactcgtcctcataaatgccaagattgtgac
atggcatttgtgaccagtggagagctggtgcgtcatcgtcgctacaaacacacattcgag
aaacccttcaagtgctccatgtgtgactacgctagtgtggaggtgagtaagctgaagaga
cacatccgctcccatacaggcgagaggcccttccagtgcagtctgtgcagctacgccagc
cgagacacctacaaactgaagagacacatgaggacacactcaggtgagaagccatatgag
tgctacatctgccatgctcgtttcacgcagagcggcaccatgaagatgcacattctgcag
aagcacacagagaatgtggccaaattccactgcccccactgtgacacagtcatcgcccgc
aagagcgacctgggtgtgcacttgcggaagcagcattcgttcatggagatgggcaggaag
tgtcgttactgtgacgctatgttccacgagcgttacgcactcatccagcaccagaaatcc
cacaagaacgagaagcgcttcaagtgcgaccagtgtgactattgctgcagacaggagcgt
cacatgataatgcacagacgcacacacacaggggagaagccgtacgcctgcagccaatgt
gagaaaactttccggcagaagcagctgctggacatgcatttcaaacgttaccatgacccc
aacttcatccccactgccttcgtctgcagcaagtgtggcaagacctttactcgcaggaac
accatgctgcgtcacgcagagaactgtaacggagagaacaccggcgatgagaacggaacc
ccgcccaagaaaggccgccgcggcaggaagaggaagatgcgctccagacgggatgacgac
gatgacgacaccgagcctgagctggatgacattgaggaagaggaggaggagctgctagct
gagattgaggtggagcaggaaccaccggttgtccctgtccctgcccctgttggcccgcca
gccaagaggaaacgtggaagacctcccaaggccaaacctgccccaactgcggcaatcatc
cgggtggaggatgagaccacaggcgaggtggatgacatcatcgtgaagaaagagatgaaa
gccgagcaggcgagccaggaggaagaagctgtcgaggatgaggagccagcagtagaggtg
gagcatgccgaaggagaacctgacagtcaggtagagtcattccagggggaggaggtggtg
caggaagtggcactgtctgtcacagaggctccgcccaacggtgacctcactcctgaaatg
attctcagtatgatggaccggtga
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