Salvelinus namaycush (lake trout): 120047597
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Entry
120047597 CDS
T07522
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120047597 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120047597 (ttc37)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120047597 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_19
TPR_17
TPR_11
TPR_8
TPR_14
TPR_12
TPR_9
TPR_CcmH_CycH
PPTA
ANAPC8
ANAPC3
TPR_EMC2
HAT_PRP39_N
ARM_TT21_C
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
120047597
NCBI-ProteinID:
XP_038849101
UniProt:
A0A8U0QR81
LinkDB
All DBs
Position
1:complement(11177732..11204248)
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AA seq
1568 aa
AA seq
DB search
MSNKEVKSSLKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQSDFKAELPKVYQKLIELYESSDKTKCYEVIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGADKAELLQLWQQMTCLLSDSIEEHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKMKEACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGISALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGPGEEALGQKLLRLRLEALVRTED
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMKEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKHTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARGLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKASVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVHVYSSTSLEVLHDLAGLALAYCRAGLIPESISAYEKALMVAS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAG
TALPASVLEQLSSAVLANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMAKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMAA
RETRRLLERLVYFPSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDGRLLE
FHTRLTSC
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcgtctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggcgctaaaacactgcaaggctgccctgaagctagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccaatcggattttaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaagtgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctgacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatagaggaacacgacaatgagactcagcag
cacttaattgcagcctttgagaaggctatggttctctccgacaatgtgcctggcgaggac
catcggaagctctcagctgactacctcaaatgcctttcacaactttcgcatgaagagtgt
aaaatgaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agcgctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtgggcctggagaa
gaggcactgggacaaaagctcctgaggctgagactagaggcccttgtgaggactgaggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtgtcgacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggccatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccagcctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaaggagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctctatatacagcctctaccagactgctgccatcaaacataccctg
ggcaagttcaaagaggctgctgcagagtacctgcagatcatagcccaggaggactatgtg
cctgcactcaaaggccttggggagtgtctgctgtccttggccagaggcctgatggaggac
tatagagatggaggagccatagacctcatccaacaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccagggccaccttctcaaccaaggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagatggagcacaacacc
ctgctactgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaatgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagccagtgttgagctctcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcagtacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagaccgaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctgaagaaacaggcagtgctggct
taccagagagctgtggagttgctgcaggcgacgccttccgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcacgtt
tactcttccacatctctagaggtgctccacgacttggctggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtggcctct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactctgctaaaacactcctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggctggtccatggggacagcaccctggccagc
gcggccctcactgagctgctgaagcagggcagggccacaggggctgccgtggagcaacgc
tgcctgctcacctgcaccctgctggccctgcagggcaactacagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccctgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgtggcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcatgtggcaggcactctggagaagatcgcagcaggaacgctctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctctctggctccacccctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagagaaagtgcggaatgtggaggaggtggaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtccagtgccggt
actgccctgccagcttccgtcctggagcagctcagcagtgccgtcttagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgaccttcacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcccctgcatggcgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaggccctgctacacttcgccaccaagatggccgcc
agggagacgaggcgtctgttggagaggctggtgtacttcccctcccaaggttacccagag
acggtggcatgtgtggctcgctggtacctcctacgccacctgcatgccaaagatgacctg
gagctgatggacaccctggtggatgacgccaaagccagtggagacggcagactgctggag
ttccacacacggctcacctcttgctga
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