Salvelinus namaycush (lake trout): 120047945
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Entry
120047945 CDS
T07522
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120047945 (si:ch211-114c17.1)
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120047945 (si:ch211-114c17.1)
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_16
HrpB1_HrpK
TPR_MalT
UTP6_C
Motif
Other DBs
NCBI-GeneID:
120047945
NCBI-ProteinID:
XP_038849501
UniProt:
A0A8U0QVP1
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Position
Sna5:10095676..10109317
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AA seq
730 aa
AA seq
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MAAEGSDSEDLNTNGLLEAPSAPEAMEAVQLPTGKEEASEENGGGGGASEAPEAAAATAY
NMPLAENEEEEDGEFPADFDRLWKLAHDNPQDFSSWTDLLQYCEQESHMTASRRALVAFL
ARYPLCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLP
ESSQRIRSAFEEAVAAAGLDFHSDRLWELFIEWEKEQGDMKAATGVYDRVLRVPTQLYSS
HYEKFKTHLNAHAPKDVLSAVEYEGLLEESKQSHKTEKSELAEGEEELPPGEEKEPTEEE
LIPKMRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLRAWHSYLDWEL
TELGGGGENEVKTETEPEAMEGQEEEERESKEGSKSSGIVAGGDRRVRILFERCLIACAL
YEEFWTKYVQYLEPQSLDEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLE
ALETSVPGLAMVRLRRAGLERRAGRLDESEALLRDAVVQAKETPHLHAFYSIKLARLLLK
LCKNPSKARGVLQEALEISPDDGKLHLNLLELEVAGDPRGSAEGVQQCVTRALAAPLSPQ
TKILFSQRGLQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRVAENGDSEDPEKMSKGED
GSAVPAPPQAPPTMPHVPMTTPPPPMMGGDMSAVHAGYGGYGSWHQQPQYGGYGGYQQAW
NYNQGYYPPS
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctcggattcagaagacctgaacaccaacgggctactggaggctcct
tcagctccggaagccatggaggctgtccaacttccaacagggaaggaagaggcatcagag
gagaatggtggtggaggaggagcctctgaggctccagaagcagcagctgcgacagcatac
aacatgcctctggcagagaatgaggaggaagaagacggagagtttccggcggactttgac
cgactctggaagctggcccatgacaatccacaggacttctctagctggactgacctactg
cagtactgtgagcaagagagtcacatgacagcgtcacgtcgggcgctggtagcctttctg
gcacggtacccactgtgctacggatactggaagaagtttgctgatctggagcgacgtgct
ggctacaccaacaaagctcaggaggtgtgtgttcagggtctgaaggccatccccctgagt
gtagatctgtggatccactacattaacctgctactgggcacgctcaacatgaacctgcca
gagtcctctcagcgcattcgcagtgcatttgaggaggcggtggcagcagcaggactggac
ttccactctgaccgtctgtgggagctgttcatcgagtgggagaaggagcagggagacatg
aaggctgccactggggtctacgacagagtcctcagagtccccactcagctgtacagcagc
cactatgagaaattcaagactcatcttaatgcccatgcgcccaaggatgtcctctcagca
gtggagtatgaggggttgcttgaggaatctaaacagagccacaagactgagaagtctgag
ttggctgagggggaagaggagttaccacctggggaagagaaggaacctacagaggaagag
ctgattccgaaaatgcgagagctcctattggctcgcagagagaaggtgtaccaagacctg
gagggagaggtcaggaagaggtggaactttgaggaagctatcaagcgtccatatttccac
gtgaagcctctggaccggacccagctgagggcctggcactcctacctggactgggagctc
accgagctgggggggggtggtgaaaatgaggtgaagaccgagacagaaccagaggccatg
gagggccaggaagaggaggaaagggagtcaaaggaggggtcaaagagcagtgggatcgtt
gccgggggagaccggagagtacggatcctgtttgagcgctgtctgattgcctgcgctctc
tacgaggagttctggaccaagtatgtccagtacctggaacctcagagtctggacgaggcg
cggggagtgtttcggcgagcctgtgagatccacctggcccacaaacacaccatgcacctg
cagtgggccaccttcgaggagaggcatggtgacctaacagaggcacggcgtgttttggag
gctctggaaacctcagtgccgggattggccatggtccggctgcgcagggcggggctagag
agacgggcgggccggctagatgaatcagaagctctgctcagggacgcggtggtccaggcc
aaagagacacctcacctccatgcgttctactccatcaaactggcccggctgctgctgaag
ctctgcaagaaccccagcaaggcccggggagtcctgcaggaggcgctggagattagcccg
gatgatggtaagctgcacctgaacctgctggagctggaggtggccggtgaccccagaggg
tcggccgagggggtgcagcagtgtgtgacgcgggcgctggccgcacctctctccccacag
accaagatcctcttctcccaaaggggcctgcagtacgctgaggactatgggacctctgtg
caaagtgtgctaacagtctatgaggagcatcagaagctactgaaagagctcggcaacaag
aagagagtggctgagaacggagacagtgaggacccagagaagatgagtaaaggagaagat
ggctctgctgtgcccgctccaccacaagcccctcccacaatgccccatgtccccatgacg
acaccacctccacccatgatgggtggggacatgagtgcggttcatgcaggctacggagga
tatggaagctggcatcagcaaccacagtatgggggatatggaggctaccagcaagcctgg
aactacaatcagggttactaccctcccagctaa
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