Salvelinus namaycush (lake trout): 120047967
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Entry
120047967 CDS
T07522
Name
(RefSeq) protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120047967
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120047967
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120047967
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120047967
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120047967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
PDGLE
Fibulin_C
Syndecan
NnrU
Motif
Other DBs
NCBI-GeneID:
120047967
NCBI-ProteinID:
XP_038849530
UniProt:
A0A8U0QVR8
LinkDB
All DBs
Position
Sna5:11337751..11356671
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AA seq
1025 aa
AA seq
DB search
MLCQSSGVMALRWDATLVLAAMLLVCCGADPTDILYRMLEEQPPNTLIGSLASDEGLPDS
GHLYKLEVGTPFLRVDGKTGDIYTTEVPIDRETLRDCRNLLEGDKCFLEFEVSITDLKQG
QGPRLIEGRIEVQDVNDNTPQFTSPILMLSIPENTHIGALFSIPMASDKDSGHNGVAEYS
LSAGPDADQLFSLQVAEDTDEKQPQLIVMGNLDREQKDSYDLNIRVVDGGTPPRASSALL
RVTVTDQNDNAPKFERSHYEAELAENSPVGHSVLQVKANDADMGTNGEIDYSLHQASDAV
QRLLRIDRSTGIIYVKGLVDREEESFLKFFVVAKDRGPNSKNSKVLVTINVKDQNDNAPA
IEIRGIGLVTHHDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPAS
ESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNAPVF
SPTLFEVDFAEENQPGDKVLDVVATDADSGSNAELTYSIIMDSATKGLFEIDPKTGEVHV
RNTLDREHREQYEFHVAAADKGSPSLRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMP
PLSPVGMVTVIDADKGENARVQLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLK
AVDAGDPPRSSYVGVTINVLDENDNSPYVTKPSNSSYKYLPPLTTPETRVEVVEAEDIDT
GPNAELVFSITGGNPYGLFHISPNNGEITLAQEFTRKHNGLHRLVVKVSDKGKPPRHTTA
LVHIFVNETMGNITLIESLVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILV
IVVVVVIRHRMQKDTKSGYQAGKKESKDLYAPKAGPKNGKGKKSKKGKVPKPTKPLEEDE
EASLQKGLNFNLINDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASK
KHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQVGDYFPTAVYNRNIMW
TDEVW
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgccagtcaagcggagtgatggcgctgaggtgggatgccacgctggtgttggcc
gccatgcttctggtttgctgtggtgccgatcccactgacattctctaccggatgctcgag
gagcagccgcccaacacgttgattggcagcctggcatcggacgagggcctgcccgactca
ggccacctgtacaagctggaggtgggcacccctttcctgcgcgtggacggcaagacggga
gacatttacaccacagaggtccccatcgaccgtgagacactgcgggactgccgcaacctg
ctcgagggcgacaagtgcttcctggagttcgaggtgtctatcacggacctgaagcagggc
cagggaccgcggctgatcgagggtcgcatcgaggtgcaggacgtcaatgacaacacaccc
cagttcacctcgcccatcctcatgctgtccatcccagagaacacacacatcggggcactc
ttctccatccccatggccagcgacaaggactcgggccacaacggcgtggccgagtactcg
cttagcgccgggcctgacgccgaccagctcttcagcctgcaggtggccgaggacacagac
gagaagcagccacagctcatcgtcatgggcaacctggaccgcgagcagaaagactcgtac
gatctcaacatccgtgtggtggacgggggcacaccaccgcgagccagcagcgccctgctg
agggtgaccgtcaccgaccagaacgacaacgcacccaagtttgagaggagccactatgag
gctgagctggctgagaacagccctgtgggacactcagtcttgcaggtgaaagccaacgac
gctgacatgggtaccaacggggagatcgactatagcctgcaccaggcctccgatgccgtc
cagaggttgctacgcattgaccgctccacagggatcatctacgtcaaggggctggtggac
cgcgaggaggagagcttcctcaagttctttgtggtggccaaggaccgtggccccaactcc
aagaactccaaagtcctggtgaccatcaacgtcaaggaccagaacgataacgcacccgcc
attgagatccgtggcatcggcctggtcacccaccacgacggcgtggccaacatctcagag
gacatgcccatcggcacgcctgtagccctggtgcaggtgtcggatcgagatgaaggggag
aatgctgtggtcacctgtgtggtggccggggacgtccccttccagctgcggcccgccagc
gagtcagccaacgaccgcaagaggaaatacttcctgcagaccacgaccctgctagactac
gagcgcatcaaggactacaggattgaaatagtagcggtggactccggtaaccctgcactg
tccagcacaaactccctgaaggtgcaagtcaccgacatgaatgacaatgcccctgtcttc
tcccccaccctgtttgaggtggactttgcagaggagaatcagccaggtgataaggtcctg
gatgtggtggccacggacgcggacagcgggtccaacgcagagctgacctacagcatcatc
atggactcggccactaaggggctctttgagatcgaccccaaaacgggagaggtgcacgtg
agaaatacgctggaccgtgagcacagggagcagtacgagttccacgtggcggcggccgat
aagggctcgcctagcctgagggggacggccacggtggtggtcaaggtgctggaccgtaat
gacaacgaccccaagttcatgttgagcggctacagcttctctgtcttggagaacatgcct
ccgctcagccctgttggcatggtgactgtcatcgacgcagataagggcgagaacgccagg
gtgcaactctcggtggagcccgacaatggcaagtttgtcatccagaatggcacaggcact
atcctctccagcatatcctttgaccgtgagaaggagagcacatacactttccgcctcaag
gctgtggatgccggtgaccctcccaggtcctcctacgtgggtgtgaccatcaacgtcttg
gacgagaacgataactccccctatgtcaccaagccctccaactcctcctacaagtacctc
ccacctctcacgacccccgagacacgcgtggaagtggtggaggccgaagacatcgacact
ggacccaacgccgagctggtcttcagcattaccggcgggaacccctacggactgtttcac
atctcgcccaacaatggggagatcaccctggcccaggagttcacccgcaagcacaacggg
ctccaccgtctggtggttaaggtgagcgacaaaggcaagccaccacgccacaccaccgcc
ctggtccacatcttcgtcaacgagaccatgggcaacatcaccctgatcgagtctctggtg
ggtcacagcctctacactcctctggacagagacattgccggggaccccaactacgcgctg
gcccagcgcagcaacatcctgtacggcagcctagcgggcatcgccggagtcatcctggtc
atcgtggtggtggtggtgatccgccatcgcatgcagaaggacaccaagagcggctaccag
gcgggcaagaaggagagcaaggacctgtacgcccccaaagcagggcccaagaatggcaag
ggcaaaaagagcaagaagggcaaggtgcccaagcccaccaagccactggaggaggacgaa
gaggccagcctccagaagggcctcaacttcaacctcataaacgatagtgtcaatgacagt
ccccggatccacctgcccctcaactaccccccgggcagccccgacctgggcagacactac
cgctccaactccccactgccctccatccagctgcagccccagtccccctctgcctccaag
aagcaccaagctgttcaggacctgcccgccaccaacacctttgtgggcacaggtgacaac
aactctacaggctccgatcaatattcggattacagctacaaggcaaacccgccgaaatac
agcaacaaacaggtaggcgactacttccccacagcagtgtacaacaggaacattatgtgg
accgacgaggtttggtag
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