Salvelinus namaycush (lake trout): 120048012
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Entry
120048012 CDS
T07522
Name
(RefSeq) cullin-4B-like
KO
K10609
cullin 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03420
Nucleotide excision repair
snh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120048012
09124 Replication and repair
03420 Nucleotide excision repair
120048012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120048012
03400 DNA repair and recombination proteins [BR:
snh03400
]
120048012
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120048012
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
120048012
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
120048012
TCR (transcription coupled repair) factors
Cul4-CSA complex
120048012
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120048012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
PG_binding_4
Motif
Other DBs
NCBI-GeneID:
120048012
NCBI-ProteinID:
XP_038849607
UniProt:
A0A8U0QVV6
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Position
Sna5:complement(17240057..17272889)
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AA seq
868 aa
AA seq
DB search
MISRLAIAITICIHFFMFPIGLPSPNPPPPTQEARPAASDVNNDSSITSSKKRKINSSER
EDIDSISSSPKTTNYSSSSCTSTSQHIQKKLRFEDSVDFIGLDVKMAEESSASCSSNKMK
TVFLAGGVGHHANGLTKTAGSTTFSNSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKE
AVEAIQNSISIKYNLEELYQAVENLCSHKISAKLYKQLQVVCEDHIKAQIDQFREDALDS
TLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSVWDMGLELFRFYIISDMKV
QSKTIDGILLLIERERSGETVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQ
RLMQEREVPDYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLN
HLLHENRIQDLCLLYQLFSRVRGGVLVLLQHWIEYIKAFGSTMVINPEKDKTMVQELLDF
KDKVDHIIHICFMKNEKFVNAMKEAFETFINKRTNKPAELIAKHVDWKLRAGNKEATDEE
LEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFT
SKLEGMFKDMELSKDIMVQFKQCQNLPGNIELTVNILTMGYWPTYVPMEVHLLPEMVRLQ
EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLE
EIKLATGIEDGELRRTLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQ
IQMKETVEEQASTTERVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPAD
LKKRIESLIDRDYMERDKENPNQYNYVA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgattagtagactggctatagctattacaatttgtattcattttttcatgtttccaata
ggtttaccttcccctaatcccccaccgccaacccaagaggctagaccagcagcttcagat
gtaaataacgacagcagtatcacgtcttcgaagaagaggaaaataaacagttctgagagg
gaagacattgattcaatctcttcatctcctaaaaccacaaattattcatcttcctcctgc
acctccacttcgcaacacattcagaagaagttgaggttcgaagattcagtagatttcatt
ggactggatgtgaaaatggccgaggagtcgtctgcatcgtgttcttctaacaagatgaaa
acagtttttttggctgggggtgttgggcaccatgcaaacgggctgacgaaaacggcaggc
tccactaccttctccaacagcaaacctggcgctgcaaagaaactagtcatcaagaacttc
aaagaaaagcccaaattgccagagaactacacacacgagacctggcaaaagttaaaggag
gcggtcgaggccattcagaacagcatttcaatcaagtacaatcttgaggagctctaccag
gctgtggagaacctctgctcccataagatatcagccaagctctacaaacaactacaggtt
gtgtgtgaagaccacatcaaggcacaaatcgatcaattcagagaggatgcactggacagt
acactcttcctgaagaaaatagacaagtgttggcaagatcactgcagacaaatgatcatg
attagaagtatatttttgttcttggaccgcacctatgttttacaaaattcaatgctcccg
tcagtctgggacatgggcctggagttgtttaggttttacattatcagcgacatgaaggtc
cagagcaagaccattgacggaatcctgctgctcatcgagagggagcgcagcggcgagacc
gttgaccgtagcctgctgcggagcctattgagcatgctttctgacctgcagatttatcag
gactcctttgagcagcgctttttggaggagactaatcgtctgtatgccgctgagggacag
aggctgatgcaggagagagaggtcccagattatctccatcacgtcaacaaacgcttagag
gaggaagcagacagagtcatcacgtatctagaccagagcacacaaaaacctctcattgcc
actgtggaaaagcaactactgggtgaacatctcactgcaacactgcagaaaggcttgaat
cacctgctacatgagaacagaatccaggacttgtgtcttctctatcagctcttcagtcgg
gtgagagggggcgtgctagtcctcctacagcactggatcgagtacatcaaggcctttgga
agtacgatggtcattaaccctgagaaggataagactatggtacaggagctgctggacttc
aaggacaaggtggaccacatcatccacatctgcttcatgaagaatgagaagtttgtcaat
gccatgaaggaagccttcgagaccttcatcaacaagaggacaaacaaacctgctgagctc
attgcaaaacacgtggattggaagctgagggcgggaaacaaggaggccacggacgaggag
ctggagaagatgttggacaagatcatgatcatcttccgatttatttatggaaaagatgtt
tttgaggccttctacaagaaagatctggccaagaggttgctggtgggaaagagtgcctcc
gtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgtggagcggcattcacc
agcaagctggaaggcatgttcaaggacatggagctttccaaggacatcatggtgcagttc
aaacagtgtcaaaacctccctggtaacattgagctgacggtgaacatcctcaccatggga
tactggcccacctacgtcccaatggaggtccatctgctcccagagatggtgcggctgcag
gagattttcaagacgttttacctcggcaagcacagtggcagaaagctacagtggcagtcg
acattaggccattgtgttttaaaagctgaatttaaagagggcaaaaaggagcttcaggta
tccctgtttcagacactagtgctgctcatgttcaatgaaggagaggaattcaccttagag
gagatcaagctagctacaggaatagaggatggcgagctgcggcgtaccctgcagtcgttg
gcgtgtggcaaggcgcgcgtcatccacaaagtccccaaaagcaaagacgtggaggacgga
gacaagttctcgtgtaacgatgacttcaaacacaaactcttcaggatcaagatcaaccag
atccagatgaaagaaacggtggaggagcaagccagcaccacggaacgagtctaccaggac
cggcagtatcagatcgacgccgccatcgtcaggatcatgaagatgaggaagactctgagc
cataacctcttggtgtcggaagtgtacaaccaactcaagttccctgtcaagcctgctgac
ctaaagaagagaatagagtccctcattgacagagattacatggagcgcgacaaggaaaac
cccaaccaatacaactatgtggcttaa
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