Salvelinus namaycush (lake trout): 120048062
Help
Entry
120048062 CDS
T07522
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120048062
09122 Translation
03013 Nucleocytoplasmic transport
120048062
03015 mRNA surveillance pathway
120048062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120048062
03041 Spliceosome [BR:
snh03041
]
120048062
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
120048062
Spliceosome [BR:
snh03041
]
Common components
Common spliceosomal components
Cap binding complex
120048062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
AAA_13
Dynein_AAA_lid
Vfa1
WIT1_2_N
FapA
GBP_C
EMC3_TMCO1
DUF1281_C
RRF
Exonuc_VII_L
tRNA_bind_2
Motif
Other DBs
NCBI-GeneID:
120048062
NCBI-ProteinID:
XP_038849679
UniProt:
A0A8U0QXC3
LinkDB
All DBs
Position
5:23280980..23295075
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPVEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYAVLSSLPWV
GKELDEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLYAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPVPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYVRLDSMNTICIDRLLNWFSHH
LSNFQFRWSWDDWVDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSGLIPAD
PIFFYKYQDEANSALPGYAVAIAVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDCDEGKLHILRVVYEVWKNHPQM
VSVLVDKLIRTQIVDCAAVANWLFSPSMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtctagaagacggcacagtgacggggatgatggtggccagtctcacaaaagaaggaga
acgtctgagcccgttgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaacttggaaggtctcgcaggtgtattggaagcggac
ctccccaattacaaaaacaaaatcctgcgcatcttgtgtgctgtggctcgacttctaccc
gagaagctgaccgtgtacacaacactagtgggcctgctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatcagacaacttaaagagaccttgaaggccaacctg
tacaccgaagctctttacctagtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagcgtcactcaggaggaggat
gttccacaggtgcgttcggactggtttgtctatgctgtactctccagtctcccctgggtt
gggaaggagcttgatgagaagaaggacgtagagatggaccggctcctcaaccagattgac
ggttatctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacggcagag
aagccacacccacaagaagagtacctggactgcctgtacgctcagatccaaaagctaaag
aaggaccgctggcaggagcgccacatcttgcggccgtacattgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacctttcaccccaccagcccacatgcccgactgc
cagtaccccgtgccccgcgttatctttcgcatgttcgactacaccgatgcccccgagggc
cctgtcatgccaggcagccactctgtggagaggtttgttattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctgagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgatgttatgtacactacgctgctcattgagctctgc
aagctgcagccaggctccctgccccaagttttggcccaagccacagagatgatgtacgtg
aggttggacagcatgaacactatttgcatagaccgactactcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactgggtggactgtttggccctggat
gcagacaaacccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtccctcccactttctcaggactcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgcggtg
gcgatagcggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgtg
ctcaaagacgtgccgaaccccaaccaggaagatgacgacgatgagggcgagggcttcaac
cccctgaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagatcctgaaggccctgacggactgtgac
gagggcaagctgcatatcctccgggtggtctacgaggtctggaagaaccacccacagatg
gtctctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagccgtagcc
aactggctcttctcccctagcatggctcatgagtttaccaggttttacgtgtgggagatt
ctgcactccactatccgtaagatgaacaaacacgtccagaagattcagaaagagctggaa
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggagacgag
gaagacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggaaaaggtggagtcggcccagagtgagcagaagaaccttttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaattgcatcgagaggctgcagcaaatcttcctcatgcac
catgtgacaatccagcagtacatggggacactggagaacctgctgttcactgccgagctc
gaccaccacatcctagctgtgtaccagcagttctgtgccctgcagctctga
DBGET
integrated database retrieval system
