Salvelinus namaycush (lake trout): 120048085
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Entry
120048085 CDS
T07522
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120048085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120048085
03036 Chromosome and associated proteins [BR:
snh03036
]
120048085
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120048085
Coactivators
SAGA/TFTC/STAGA complex
120048085
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120048085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
ADPRTs_Tse2
Motif
Other DBs
NCBI-GeneID:
120048085
NCBI-ProteinID:
XP_038849715
UniProt:
A0A8U0QUH7
LinkDB
All DBs
Position
Sna1:70176956..70264756
Genome browser
AA seq
1006 aa
AA seq
DB search
MASTSDLLEDMLFSEVDEKAVSDLVGSLESQLVGQSNPADTQSENRGAGSTVTAKHHLGK
TLPAQVGNVTTLVQQQQQGQHKAGMHQEMNYKQIILEKTVTSSSLSSIPSFEEASTTSDT
GVNATKSGLQSHGTSSITTVPASGGVATYPLVNSISSSTSRGSALASGQTSTDIVDHPRK
RITASLRSASVGIQSLNGTGGAVTSRNNPPAAGTDALISSASAANSSRTVDVTSCVNTTN
FTLSNSSISSTQSAIPLDKGTPTIALQRLPSHIVASIAHNGNGTTVSALVKQGAIGPITC
AAASQVNHKKEGSEAKSDAPVQSKIVMSSPLGVVNSVINSVSSPSAVFNLAAATTPSHVM
AKPAVNVVGQTTTVGMVRPASPSVATATQPLLRPGVPAAQRIVAPQLIVRPPQQQQTTIQ
LPPGFTIPPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQAQAQNNISPRTATPTAGAT
FRATTPQKGPMAPAVAVTAPQQAPVVMAPQAPVVMAPQVQAGAQAASQPALPPQTSAPVA
PGASVISQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTN
RLQSELKSSPQPYLVPFLKKSLPALRLSLLNIQHSLIQPLPQAKATPITGTSSAIMAGPA
VRGRLPNSVSTTGASVGAQGHTAALGIKQAGSFGCQVRMPMVITPLRTQGTVSKGATFQA
GKSPVGFAVKGSGNQKNKLNDPGGSSFRDDDDINDVASMAGVNLNEESARILATNSELVG
THIRSCKDEAFLHPGLLHRRILETAKKFGVSEVPMEAVNFISHATQSRLRTVLEKVSSIA
QHRMDGGKDEEGFEQSADVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDPEQ
ARLKQKAKEMQQQEIALVRQRDANLTALAAIGPRKKRKMDSPGATPSGTEVSGSSVGSPG
AASSPSTSSQRQRQRITRVNLRDFIFYMEQERETAHSLLLYRALLK
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacctcagacctactggaagatatgctattttctgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacaaagcaaccctgcagat
actcagtcggaaaacagaggtgctgggtctacagtcactgcaaagcatcacttagggaaa
acgctaccagcccaagtgggtaacgttactacactagtacagcagcagcaacaaggacaa
cataaagctgggatgcaccaggagatgaactataaacaaattatcttagagaaaactgtt
acatcttcttcgctgagttctattccgtcctttgaggaagcttccaccacttcagacact
ggagtaaacgctaccaagagcggtttgcaatcacatggaacatcatctatcacaacagta
cctgcatctggtggtgtagcaacttatccgcttgtcaacagcatcagcagcagcaccagc
cgaggttccgctctggcttcaggtcagacatcaacagacattgtcgatcatccaagaaaa
cgtataactgcatcgttacggagtgcatccgtgggaatacagagtttgaacggtaccgga
ggagcggtaacgtcaaggaataatccccctgcggcgggaactgatgcgttgattagcagt
gcaagtgcagcaaactcaagtcggaccgttgacgttacatcttgtgtaaatacaacgaat
ttcactttatctaactccagcatttcttcaactcaatcagcgattcccctggataaaggg
actcctactattgctttgcaaagactaccaagtcacattgtagcgagcatcgcacataat
ggaaatggcactaccgtctcggccttggttaaacaaggcgcgataggaccgatcacctgt
gcagcagcttcgcaagtgaaccacaaaaaagagggttctgaagcgaagtcggacgctccc
gtacagtccaaaatagtcatgtccagtccgttaggtgttgtcaattccgtaataaactct
gtttcctctccctctgctgttttcaacctagcagcggcgactactccaagtcatgttatg
gcaaagcctgcagtcaatgttgttggacaaacaacaacggttggaatggtaagaccagcg
tcaccgtctgtggccacagctacacagcctctgcttcgaccgggagtcccagcggctcaa
aggattgtagccccccagctgattgtcagacccccccaacaacaacagacgaccattcaa
ctgcctcctgggtttaccatcccaccgggaatggtgttggtgcgcactgagatgggtcag
ctggtgatggtcccacagcaggcccttgcccaggcacaggcccaagcccaggcccaggcc
caggcccaggcccagaacaacatctccccccgaactgccacccccactgcaggggccacc
ttcagagcaactaccccacagaagggccccatggcgccggctgtggcagtgacggctccc
caacaggcccccgtggtgatggccccccaggcccccgtggtgatggccccccaggtccag
gctggggcccaggctgcctcgcagccagccctgcccccacagaccagcgcccctgtagcc
ccaggagcctctgtcatctcccaggagatgcaggagaatgtgaagaagtgtaagaacttc
ttggccaccctgataaagctggcttcccacaactctccgtcacctgagacctccaaaaat
gtcaagtcactggtccaggatctactggatgctaagattgagcctgaggagttcaccaac
agactgcagtcagagctcaagtcgtctcctcagccctacctggtccccttcctcaagaaa
agcctcccggccctgcggctgtctctgctcaacattcagcattccctgatccagcctctg
ccgcaggccaaagccacccccatcacaggcaccagctctgccatcatggccggcccagct
gtccgcggccgcctccccaacagcgtcagcaccacgggggccagtgtcggggcccaggga
cacacagctgccctgggtatcaagcaagcgggctcctttggttgccaggtcaggatgccc
atggtgatcacaccattaagaacacaaggcactgtcagcaagggagccacgttccaagca
ggcaaaagtcctgtgggttttgccgttaagggctctggaaatcagaaaaacaagctgaac
gatcccggaggcagttctttcagggatgatgatgacattaacgatgtggcgtccatggcg
ggggtgaacctgaatgaagagagcgctcgtatcctggccaccaactctgagctggtggga
acacacatccgctcctgtaaagatgaggccttccttcacccgggcctgttacacagacgc
atcctggagacagctaagaagtttggcgtgtcagaggttcctatggaggctgtgaacttc
atctcccacgctacccagtcccgactccgcactgtgctggagaaggtctcctccatcgca
cagcacaggatggacggcggtaaagatgaggaggggtttgagcagtcggcagacgtgcgt
tcgcagctaaagttctttgagcagctggagaggatagagaagcagaggaaggatgaacag
gagagagagatcctactcaaagcagctaaaagtcgctccaggcaagaggacccagagcag
gctcggctgaaacaaaaagctaaggagatgcagcaacaggagattgccctggtgaggcaa
cgagacgcaaacctgaccgcgctagctgccatcggacctcggaagaaacgcaagatggac
tcgccaggggccacgccgtctgggaccgaggtatcaggcagctcagtggggtcgccgggc
gctgcctcctccccctccacgtcgtcacagcggcaacgtcaacgcatcacccgcgtcaac
ctcagggacttcatcttctacatggagcaggagagagagacagcccactcacttctgctc
taccgggctctgctcaagtag
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