Salvelinus namaycush (lake trout): 120048144
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Entry
120048144 CDS
T07522
Name
(RefSeq) RNA-binding motif protein, X chromosome-like isoform X1
KO
K12885
heterogeneous nuclear ribonucleoprotein G
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120048144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120048144
Spliceosome [BR:
snh03041
]
Common components
Common spliceosomal components
hnRNP proteins
120048144
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM1CTR
RRM_7
Nup35_RRM_2
PHM7_cyt
RRM_5
RRM_PARP14_3
RBD_DEAH11
RRM_occluded
DUF7373
Motif
Other DBs
NCBI-GeneID:
120048144
NCBI-ProteinID:
XP_038849802
UniProt:
A0A8U0QV06
LinkDB
All DBs
Position
Sna5:27995095..28001468
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AA seq
385 aa
AA seq
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MAEADRPGKLFIGGLDTETNEKALEKYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
DAKDAAREMNGKSLDGKPIKVEQATKPQFESAGRRGPPPMRGRGPPRGPRGSRGAPMRGP
PSRDYYDNVGIVEPFFKGISSRGPPPLKRGPPIRNGGPPPKRHAPSPMGRPSMSRDRDPY
GPPPPRRDSMSRRDDYPSPRDEYYSTKDSYSSREYVSSRDTRDYAPTPRDYPPRDYPQSS
SRDEYGSMSRGYSDGYGGGREPKSYMERPSAASYREPYDGYGNSRSAPPSRGPQPSYNGS
GGSSRYDDYGSSSRDGYGSRESYPSSRSEPYPPSRGERMGKQERGPAPPIERGYPREAYS
GSSRGAPRGGRGGSRVDRGIARSRY
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggctgaccgaccagggaagctcttcatcggtggcctggacactgaaaccaac
gagaaggcccttgagaagtatttcagcaaatatggcagaatagtagaagttctgttgatg
aaagaccgtgaaacgaacaaatcaagaggttttgcttttgtgacctttgagagtccggca
gatgcaaaggatgctgcgcgtgaaatgaatgggaagtcacttgatggtaagccaattaag
gttgaacaagcaacaaaacctcagtttgagtcagcaggaagacgcggcccaccccccatg
cgtggccgcggtccccctagaggtcctagaggatctagaggagcaccaatgaggggtcca
ccatccagagactactatgataacgtagggattgtagaaccctttttcaaagggatttcg
tccagaggccccccaccactgaaaaggggacctccgattcgtaatggaggccccccaccc
aagagacatgctccttctccgatgggcagaccttccatgtctagggacagggacccctat
ggcccaccccctccccgcagagactcaatgtccagaagggatgattacccatcaccaaga
gatgagtattacagcacaaaggacagctattctagccgggaatatgtgagttccagggat
acaagggactacgcaccaacaccacgggactatccgccaagggattatccccaatccagt
tcccgcgatgaatatgggtcaatgtcaaggggctacagtgatggttatggtggaggccgg
gaacccaaaagctatatggagcgccctagtgcagcctcttatcgagagccctacgatggt
tacggtaactcacgcagcgccccaccctcaaggggcccccaaccatcctacaatggcagt
ggcggaagcagtcgctatgacgactatggaagcagttcccgggatggctatggcagtcgt
gaaagttaccccagcagtcggagtgaaccataccctcctagccgtggtgagcgaatgggc
aagcaggagcgggggccagcacctccaatcgagagaggctacccccgtgaagcgtacagt
ggctcaagtcgcggggcgccccgtggtggccgcggcggcagcagagtcgatagaggaatt
gcccgcagcagatactga
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