Salvelinus namaycush (lake trout): 120048154
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Entry
120048154 CDS
T07522
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120048154 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120048154 (cstf2)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120048154 (cstf2)
U7-dependent histone pre-mRNA processing factors
120048154 (cstf2)
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Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
DUF8400
Motif
Other DBs
NCBI-GeneID:
120048154
NCBI-ProteinID:
XP_038849825
UniProt:
A0A8U0QV33
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Position
5:complement(28529391..28559811)
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AA seq
537 aa
AA seq
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MANLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDNIIPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFALL
QAQVVMRIVDPEIALKMLHRQIPVQPLVPNSQAGPVPVANQPIPPPNAPVSQSQPMPGMH
MNGAPQMMQPPPIGGGPGPMPGQGLVGPPGPGVIPPRGLLGDGPNDPRGGTLLSVTGEVI
EPSRGGGFIGAPPPHQGPPIHMNQMVGGPPPDMRPPHDMRGPPMGEPRGMMGEPRGPPMG
EPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMM
EPRGPPMETRGRDPRAVDTRGPVSGQRVPMAQGMQGPLPHSMNPNAPTTARPGPGVPQSG
GSFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQIQKTAGAP
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttagcagctgctgttgttgctgccgctggtagagatcccgctgttgaccgt
tcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactgaaa
gacattttttcagaagtcgggcttgttgtcagttttaggttagtgtatgatagggagaca
ggcaagccaaaaggatatggcttctgtgagtatcaagaccaggagacggccctcagtgcc
atgcggaacctgaacggaagagagttcagcggccgagctctccgtgtcgacaatgctgct
agtgagaagaataaagaagagctcaagagtttggggacgggggcccctatcattgaatct
ccctacggggacaacataataccagatgaggctccagagtctataagcagagctgtggcc
agtctgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaaaat
agtccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgccttgctc
caggcccaggtggtcatgaggatcgtagaccctgagatcgccttgaaaatgcttcaccgt
caaatcccagtgcagccattggttcccaacagtcaagctggaccagtgccagtggccaac
cagcctattccaccgcccaatgctccagtctcccagtcacagccaatgccgggcatgcac
atgaacggagccccccagatgatgcagccccctcccataggtggaggacctgggcccatg
ccagggcagggactggtgggaccaccaggaccaggtgttatcccccccagaggcctgctt
ggtgacggccccaacgacccccgaggaggaaccctgctctcagtcacaggagaggtcatc
gaacccagtcgtggaggaggcttcattggcgcccccccaccacaccaggggccccccata
cacatgaaccagatggttggcgggcctcctccggacatgaggccgcctcacgacatgaga
ggaccccccatgggtgaacccagaggcatgatgggagagccccggggaccccccatgggt
gaacccagaggcatgatgggagagccccggggaccccccatgggtgaacccagaggcatg
atgggagagccccggggaccccccatgggtgaacccagaggcatgatgggagagccccgg
ggaccccccatgggtgaacccagaggcatgatgggagagccccggggaccccccatgatg
gagcccaggggaccccccatggagacgagaggtcgtgaccccagagcggtggacacccgt
ggaccagtgtcaggccagagggttcccatggcccaaggaatgcagggccccctcccccac
tccatgaatcctaatgcccctacaactgccagaccgggtcctggtgtaccacagtccgga
ggtagcttcagcccagggcaaagccaggtgacctcacaggaccatgagaaggctgccttg
atcatgcaggtgctgcagctgaccccagaacagattgctatgctgcccccagagcagagg
cagagcatcctcatcctcaaagagcagatccagaagaccgccggggcgccctaa
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