Salvelinus namaycush (lake trout): 120048175
Help
Entry
120048175 CDS
T07522
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15 isoform X1
KO
K16499
protocadherin delta 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120048175 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120048175 (si:ch73-233f7.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
120048175
NCBI-ProteinID:
XP_038849857
UniProt:
A0A8U0QUL9
LinkDB
All DBs
Position
Sna5:29528780..29535413
Genome browser
AA seq
1018 aa
AA seq
DB search
MEHRLASTRWTPLTGMVVCLLVCACVVDLVLAQIRYSIPEELDHGAFVGNIAEDLGLDVA
KLSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREELCERNPTCFLHLQVVIENPLELY
RVEVEILDVNDNSPSFPWSEFNLEITESAAPGSRFPLESAQDQDVGTNSLRSYQLSSNEH
FVLNIQTRNDGSKFAELVLGTPLDREQQKTHEMVLTAVDGGSPERSGTALITITVLDAND
NVPVFDRSVYRASLVENAPRGTLVLKLNATDLDEGANGEVSYAFSGHAPLKVRELFSVDQ
YTGEIRVKGIVDYEKASVYELYVQAKDRGPSAVAVHSKVLVDVLDVNDNAPEVILTSVST
PVQEDAPPGTVIAVISVMDRDSGENGNVDCHIPSNVPFQLHSSFKNYYTLVTSEFLDREA
VSEYNITLTARDLGSPSLSTRKTILVQVSDINDNPPRFAQPSYTVYVTENNAPGAFICSV
TAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQIRVQA
QDAGFPPLSSNVTVNVFVLDQNDNAPVIVSPLPKNGTVATEVVPRSVDAGHLVAKITALD
ADAGQNSRLSYQVLQATDPGLFSVALYTGEIRTIRRFVDKDATRQRVVILVKDNGQPPLS
ATVSILLSVVDNVPESLSDFGDLTLSPQPPSNLALYLIVSLSTISLIFLVAIIVLAAVKC
YKDRETISGYNLPPFACCCCGGFQPEPPPEVFKKSNLNLQISTGAKVPTNCMEVNGNGTL
SQAYCYKVCLTPESAKSDFMFLKPCSPISTPRNNEAKGADNLAWSAHHRSSSVNNHSGAT
TPNELKQPNTDWTLTKNQNSSLKSCNSINMDGILMRKAMHADPENYMTPMTGQYWTWGTH
MRDYKMSPPATGPPPRSWTPRCTPPPQQQPQTQQPPLPPHPHPHPHPHPHPPPDYQHNVY
IPGTPSALCTLRPAATHHRSELDVHNSFSTFGKKRRFIHNYEPQTDAAAVINNDLYND
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggagcacaggctcgcgagcacgcggtggacaccgttaaccgggatggtggtgtgcctt
ctggtgtgcgcgtgtgtggtggacctggttctggcacagattcggtactccatccccgag
gagttggaccacggggcttttgtcggtaatatcgctgaggacctcggtttggacgtggct
aaactgtccgcccgtcgcttccggattgtctccggtgccaagaaacagtacttagaggtg
aatctggaaaacggtattttatttgttaacgagaagatcgaccgcgaggagctgtgtgaa
cggaacccgacctgcttcttacacttgcaagtggtgatcgagaatccgttagaactgtac
agagtggaggtggagattttggatgtgaacgacaactctcccagcttcccgtggagcgag
ttcaatctggagattacagagtcagcggcgcccgggtcccggttcccgttggagagcgcg
caggaccaggacgtgggcaccaactcgctccgatcctaccagctgagctccaacgagcac
tttgtactaaacatccagacacgtaatgacgggagcaagtttgccgagctcgtgctgggg
accccgctggacagggagcagcagaagacgcacgagatggtgctcacagccgtggacggg
gggtcgccagagcgttcgggcacggctctcatcaccatcacggtactggatgccaacgac
aacgtgccagttttcgaccggtctgtttaccgggcgagcctggtagaaaacgcaccgaga
gggactttagtgctgaagctaaatgccactgatttggacgagggtgcgaacggggaggtc
tcatacgcgttcagtgggcacgcacccctcaaagtgcgcgagctgttcagcgtggaccag
tatacgggtgagatcagagtgaaggggattgtggactatgagaaagcgagtgtttatgag
ctgtatgtgcaggctaaagacaggggtccctcagcagtggccgtgcacagtaaggtactg
gtggatgtcttagatgtgaatgataacgcgccggaagtcatcctcacctccgtgtccaca
cctgtccaggaagacgcgccaccgggcacggtgatagccgttataagtgtcatggaccgg
gattcgggagagaacgggaatgtggactgccatatccccagcaacgtccccttccagctc
cactcctcttttaagaactactacactctggtgactagcgagtttctcgacagagaagcc
gtctccgagtacaacatcaccctcacggcccgggacctgggctccccgtctctctccact
cggaaaaccatcctcgtccaagtgtctgatattaatgataaccccccgcgcttcgcacag
ccatcatacaccgtttatgtgaccgagaataatgccccgggcgcattcatttgctcagtc
actgctttcgaccctgattctaatcagaacgcctatctgtcctattcgattctagagggt
cagatccagggcatgcccgtttccacttacgtctccatcaactcggacaacggaaacatt
tacgcgctgcgctcctttgactatgagcagctaaggaactttcagatacgggtgcaggcg
caggacgccggtttccctccgctcagcagcaatgtcacggtaaatgtgttcgttttggac
cagaatgataatgctccggttatcgtgtccccattgcccaagaacgggaccgtggcgaca
gaggtagtcccgaggtcagtggatgcggggcacttagtcgccaagatcactgcgctagat
gcggacgcaggacaaaactcgcgcctctcctaccaggtgctccaggctacggacccgggg
ctgttcagtgtcgccctctacacgggagaaataaggacgattcgccggttcgtggataag
gacgctacgaggcagagagtcgtcatcctggtcaaggacaacgggcagccgcctctctcc
gccaccgtctctatcctcctctccgtggttgacaacgtgccggagtccctgtctgatttc
ggcgacctcactctgagcccccagcccccctccaacctcgccctctacttgatcgtgtca
ctgagcaccatctcgctaatcttcctggtggctattatcgtcctggctgcggtcaagtgt
tacaaggacagagagaccatcagtgggtataacctcccccccttcgcctgctgctgttgc
gggggcttccagccagagccgcccccggaggtgttcaagaaatctaacctaaacctgcag
atctccaccggggcgaaggtgcccaccaactgcatggaggtcaatggcaacggtactctg
tcccaagcctactgttataaagtatgtctgacccccgagtcagctaagagtgactttatg
ttcctgaagccgtgcagccccattagcaccccgaggaacaacgaggcaaagggggctgat
aacttggcttggagcgcgcaccaccggagctcatcggtgaacaaccattccggagccacc
actccaaatgagctcaagcaaccaaacacagactggaccctcacaaagaatcagaactcc
tctttgaaaagctgtaactctatcaacatggatggcattctgatgaggaaggccatgcat
gcagacccagagaactacatgacacccatgactggccagtactggacctggggcacccac
atgagggactacaagatgtctcctcctgccactgggcctcctcctcgctcttggaccccc
cggtgcacccctccaccccagcaacagccccaaacccagcagcctccactccccccacac
ccccaccctcatcctcaccctcacccccacccacctccagactaccagcataacgtgtac
atcccgggcacgccgtcggccctgtgcaccctgaggccagcagccacccaccaccgcagc
gagctggacgtccacaactccttctctacctttggcaagaagagacgcttcatccacaac
tacgagccccagacagacgcagcagctgtcatcaacaatgacctgtataatgattaa
DBGET
integrated database retrieval system
