Salvelinus namaycush (lake trout): 120048362
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Entry
120048362 CDS
T07522
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120048362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120048362
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120048362
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120048362
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120048362
NCBI-ProteinID:
XP_038850204
UniProt:
A0A8U0QYD4
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All DBs
Position
5:47478389..47505499
Genome browser
AA seq
1053 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSSSAQGFVAHLKSTGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERHVMEIERKNRNYTLLSDSESDGEAVREREKEKKKSKDR
GDKRKHLRKREESQSSSEEETPKSSKLGHGNQKSSKNDEEEEEEWEKEERERVLDLEERD
AFAERMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKRE
AEKLEDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRYY
MPEEKRSKDIPQRDMELELEMPMEGGGEQGRWEEERLKTASLSFGAKKEREKGLKAEREK
YQLILEEDEMINFVSSAVIMKGTQDEKEQEQAALSQAEVQKQSIQEVRRSLPVFPYREDL
LLAIQQHQILIIEGETGSGKTTQIPQFLMESGYNDGGMKIGCTQPRRVAAMSVAARVAQE
VGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLH
TDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLEACVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPIY
ANLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQW
LESGYSTQWCYENFIQFRSMKRARDVREQLEGLMERIEVEVCSSGGDIVPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWL
LEVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagagcaatgggtgagcgacagtctgcacgacatcctcggccttagtgac
agatatgtcgcccagttcatgatcggctccgcgcgtaaatcctcgagcgctcaaggcttt
gtggcccacctcaagtcgacgggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaaacaagtcgttgaaaagccagccagagcgata
gagcgacatgtcatggagattgagaggaagaatcgaaattacaccctactgtcggacagc
gagagtgacggagaggcggtgagagagagggagaaggagaagaagaaaagtaaagaccga
ggcgataagaggaagcacctcaggaaaagggaggagagtcaatcatctagtgaagaggag
acccctaaaagtagtaagctgggccatggcaaccagaagtccagtaagaatgatgaagag
gaggaggaggagtgggagaaggaagagagagaacgcgtactggatctggaagagagggat
gcctttgccgaacgaatgaaactgaaagacaaagacaagacgaggaacatcatggagaga
acggacaagaagggctacgaggaggctcagaaaagactaaagatggcagaggaggatcac
aagaaaatccttccagagttgaggaaggagtctcgcaggaactacctgtctaagagagag
gctgagaagctggaggacctggaggcggagatagccgacgaggagtacctgttctccacg
gacgcgctgacggagagggagcggaaggagctggagtacaagcgcaacctccgagacctg
gccaaggactacaagaaagccggcgccaaggagaaggaggagaggaagaacagatactac
atgccggaggagaagaggagtaaagatattcctcagagggacatggagctggagttggag
atgcccatggagggtggaggagagcagggtcgctgggaggaggagaggttgaagaccgcc
tcgctcagcttcggggccaagaaggagagggagaaagggttgaaggcagaaagagagaag
taccagctgatcctggaggaggacgagatgatcaactttgtcagcagtgccgtcattatg
aagggaacccaggatgaaaaggagcaggagcaggcagccctgtcccaggcggaggtccag
aagcagtccatccaggaagtgagacgcagcctgcccgtgttcccctacagagaggacctg
ctcctggccatccagcagcaccagatcctgatcatcgagggagagacgggctccggcaag
accacccagatcccacagttcctcatggagtcgggctacaatgatggaggcatgaagatt
gggtgtacccagccccgtagagtggcagccatgtccgtagcagccagggtggcacaagaa
gtgggagtcaagctgggcaacgaggtaggctacagtatccgttttgaggactgtacgtcg
gagaggacagtactcaaatacatgactgacggaatgctgctcagggagttcctcacagag
cctgatctggccagctacagtgtggtcatcattgacgaggctcacgagcggacgctgcac
acagacatcctgtttggcctgatcaaggacatcgcccggttccgtccggacctgaaggtg
ctggtggccagcgccaccctagacacagagcgcttctcctgcttcttcgatgacgcccct
gtcttcagaatccccggcaggaggttccctgtggacatcttttacactaaggctcctgag
gcagactacctggaggcctgtgttgtgtcggtgctacagatccacgtcacacagcccccc
ggagactgtctggtcttcctcactggacaggaggagattgagacttgctgtgagctgctg
caggagagatgcaggcgtctgggctctaagatatctgagcttttggtgcttcccatctac
gccaacctaccttccgacatgcaggccaagatcttcagccccacaccacctggctcacgc
aaggtggtggtggccactaacattgcagagacctctctaaccatcgatgggatcatatac
gtcatagatccaggcttctgcaagcagaagagctataacgcccgcactgggatggagtct
ctgattgtcacgccttgctcacgggcctcagccaatcagcgagcaggtcgtgcaggcaga
gtggctgctgggaagtgtttccgtctctacactgcttgggcgtttaaacacgagatggag
gagtccaccgtgcccgagatccagcgaaccaacctgggcaacgtagtgctactgctcaag
agcttgggaattaatgaccttatccactttgacttcatggacccgccccctcacgagacc
ctggtgctagctctggagcagctgtacgcactgggtgcactcaaccacctcggagagctc
accaagttgggccgcaggatggctgagctgccggtggaccctatgctgagcaagatgatc
ctggcctcagaacagtataagtgttctgaggaggtgttgaccatcgctgctatgctgtct
gtgaacaactccatcttctaccggcccaaagacaaggtggttcacgctgacaacgccagg
cagaactttgtggtccccggaggagaccatatggtgctgctcaacgtctacacacagtgg
ctggagagtggctactccacccagtggtgctatgagaacttcatccagttccgctccatg
aagcgggcgcgggatgtcagggagcagctggagggcctgatggaaaggatcgaggtggag
gtgtgcagctcaggcggcgacattgtgcccatccgcaaggcagtgacggcggggtatttc
taccacacggcgcggctcagcaaggggggctacaagacggtgaagcaccagcagacagtc
tacgtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccacgag
ctggtcttcactaccaaggagttcatgagacaggtgattgagatagacagcagctggctg
ctggaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaagaag
atgcctcgcaaacagggcaaggccaaggaagagctgggctaa
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integrated database retrieval system
