Salvelinus namaycush (lake trout): 120048427
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Entry
120048427 CDS
T07522
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120048427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120048427
03036 Chromosome and associated proteins [BR:
snh03036
]
120048427
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120048427
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120048427
PBAF complex
120048427
GBAF(ncBAF) complex
120048427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
120048427
NCBI-ProteinID:
XP_038850318
UniProt:
A0A8U0QUJ7
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All DBs
Position
Sna5:complement(50870758..50888517)
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AA seq
1103 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPMGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEEDLTKDMEDPSPVPSMEEVTLPKNVNSKKDNENTPVKGGAVADLDDLEDDSVVSGGK
EEEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKS
KSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDA
ESRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMLNFPEKGKDKPSDMQNFGL
RNDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL
RLPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEF
SRVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTAPPSLFVAV
EPAETEKVDTDSDSQQPDKAESKDEAEKPSESAEKLAEGEKVKSETAEPSEREEGESEGG
EGKATADKDKEEAMETSEDKEKEEQGAMEEERKKLEPDGGEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQQANTAAQGPAPHHGPPGPGMHHGPSHHGPPPAMHSGHGPPG
PGFHPMGPHHPQQTGPMGGPGQPLPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGPSPV
QADGMPPASVGPQAAAPARVADS
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggccct
atgggcgtcggtactgcggtgggacgtaagaaagatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtacaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tctacctacaagttcaagagcgagcagggctggcgtaggtttgacttgcagaacccctcc
aggatggacaggaatgtagagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccaactgtgttcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcaccgaggacaagtctaaggccacc
catcatatctacccctctccaactcagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagcgatgtggagggggatgtggaggacccacccatctctgagaagccctgg
aaggtgcatgccaaatgggtcctggacaccgacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaataagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtcccgcaagaagggcggc
aagaaggggaaccctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggag
gaggtcactttgcccaagaacgtgaactctaagaaagataacgagaacaccccagtgaag
ggaggggcagtggctgatttggatgatctggaggatgactctgtggtctccggaggcaag
gaggaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaac
gtgaccgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaac
tgtatccatgagattgagaggcgtgcactgccggagttcttcaacggcaagaacaagtcc
aagtccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaac
ccccaggagtacctgacctccacctcctgccgcaggaacctgaccggagacgtgtgtgcc
gtcatgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgct
gagagccgacccctccccatgggccccccgcccaccccccacttcaacgtgctggctgac
accccctctggcctgacgccgatgcaccaccgccccccacagatcccctccggccagcag
atgctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctg
cgtaacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggag
tggaccgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactgg
aacaaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctg
cgtctgcccatcgaggacccttacctggagaactctgagtcgtccctgggccccctggcc
taccagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctg
gcctccgtggtggacccccgtgtggcctccgccgccgccaaggcagccctggaggagttt
agccgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcag
gaggcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagtggcatc
gcaggaactgcccccgaggagcccgagaagacggcccctccctctctctttgtcgctgta
gagccagcagagaccgagaaggtggacacagactccgactcccagcagcctgacaaggct
gagtctaaggacgaggcggagaagcccagtgagtctgctgagaagctggccgagggagag
aaggtgaagagtgagacggccgaaccgtctgaacgggaggagggcgagagtgagggagga
gagggcaaggctacagcagacaaagacaaggaggaggccatggagacttcagaggacaaa
gagaaggaggagcagggagcgatggaagaggagaggaagaagctagagccggacgggggg
gaggggaacattgccactgcagccgccgctgccctcgcctcagctgccaccaaggccaag
cacctggcggcggtggaggagaggaagatcaagtctctggtggctctgctggtggagact
cagatgaagaagctggagatcaagctcagacactttgaggagctggagaccatcatggac
cgggagaaagaggctttggagttgcagaggcagcagctgctgacggagcgccaggctttc
cacatggagcagctgaagtatgctgagatgaaggcccgccagcagatggagcagcagcag
gccaacacagcggcccagggccccgcaccccaccatggtcccccagggccaggcatgcac
cacggaccctcccaccacggaccccctcccgccatgcactccggacacggcccccccgga
cccgggttccaccccatgggtccccaccacccgcaacagacgggaccaatgggagggccc
ggtcaacccttaccaggacgcatgatgcctggcggcccccccactggcagcatgcctccc
atgatgggtccccgccaccctggagcccccaacggcatgtaccctggcccctcgcctgta
caggctgatggtatgcccccagcgtctgtgggacctcaagcggcagccccagcacgagtt
gctgacagctaa
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