Salvelinus namaycush (lake trout): 120048477
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Entry
120048477 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
120048477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120048477
03036 Chromosome and associated proteins [BR:
snh03036
]
120048477
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
120048477
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120048477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
120048477
NCBI-ProteinID:
XP_038850404
UniProt:
A0A8U0UE85
LinkDB
All DBs
Position
Sna5:372368..464013
Genome browser
AA seq
1840 aa
AA seq
DB search
MSKASAESTDQVMEEEVGQPPITDQMEEEEEAGSSTETERPSSSHTKRKPAAAAKQVGGN
ESDTSDESGQEDGASDGMLVVQPPAGTDNKEDKSRGAMKLRVDLSRRKTGKMSKASAEST
DQVMEEEVGQPPITDQMEEEEEAGSSTETERPSSSHTKRKPAAAAKQVGGNESDTSDESG
QEDGASDGMLVVQPPAGTDNKEDKSRGAMKLRVDLSRRKTDTTLQERIDCTACGQQVNHF
QRHSVFEHPMLHVLLCKSCYKYYTSDDINKDEDGMDEQCRWCAEGGNLICCDYCHNAFCK
KCILRNLGRKELSMITDDDSKWSCYICSPQPLSDIASNCSNIMTKLESFWRTGRKKEREV
KGHSKGKGHHHHGKAVVNGKEHSDGSGTLTFSYKTLKVPKELVKRTKKLIETTTGLNNTF
IHFIQQAEEEQGAGGGSGTRHRHLKAFRSVLADLKKAHAALEKDLESQFTSQGQGMQNGD
AVSNTDGHDGHDQIDNGQEAEEDKMADTEDGGVSEDTEMEGSPTPTPQDHSETDSQAKDQ
TAVKMEEEEEDGTEEEADRDKDIVSVGPSVPDELFQMVKSLADSTGLTPGNDATELTAAS
QSENPATGSTRKSHDTQKEKAMPKVKNLILKLTPVPMVTTRASRSKSKDKDGGKERSKDG
GKERSKDGGKERSKDGGKERSKDGGEEKSPSKLKRRTKGSSEKERGNEEEKERKESKASS
MLTSDPSKQDVDSDSDEVPDILVQTAAAEHSSDEDVQQDADSNQGNKRVGEEVGEEVGEK
DKEKTDKKPATKRKLKADDSDNSESDSDEYAKKKKKSSTASAKKTSKKKKKDSGGSSNSD
SDLEKEMKGLSKLGTGKRRSSRVKKEREEKENKGGDRRRSYELKRKARGRGAKQQDSSSD
DVEEEEEEGGGSGEESGDQQKIKPIVEETVVAGRGTFHQSSGEEGNQDASQMAVDDDDDD
PENRIAKKMLLAQIKANYSSGAEESSDEDGDEKEQRKGGEEEEEEDDNEEEEEEGDSGSD
VDVKKSGGRRHRLLRHKLTLSEGESGEEKEKPASKGKKETKRTRRKVGSDDSADLDSEES
ASSSESGVSEEISEESEEESEEESEEGSSRRRTTRSSKKKKKKKEERSYAQKKKRRRIKV
QDSSSDEKSGSGEDGSGKEDGDTPKGQRKKIRKILKDDKLRTETRDALKEEEERRRRISE
REQLREKLREVLVVEEASAVACPITTKLVLDEDEETKEPMVQVHRNLVTKLKPHQVDGVQ
FMWDCCCESVKKTNKNSGSGCILAHCMGLGKTLQVVTLLHTLLLCEKLDFSTALIVCPLN
TVLNWLNEFEKWQYGFKDEESLEVTELATVKRPQERAAALQQWQEDGGIMIIGYEMYRNL
TQGRNIKSKKLKETFQKTLVDPGPDFVICDEGHILKNEASAISKAMNSIKTRRRVVLTGT
PLQNNLIEYHCMVNFIKENLLGSVKEFRNRFVNPIQNGQAADSTDQDVRIMKKRAHILYE
MLNGCVQRRDYSALTKFLPPKHEYVVSVRVTPIQCTLYRHYLEHLTGAGNAVEGGRGRAG
TKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMEEFIASETDESSMSMTSEDEKQ
KKXPHKKRGKARKKDSDSDSDALEVIKEWNTSSRGGDPSSRNRAEPEEEVRPASSPGTRS
PDWHKEFVTEADSEILEHSGKMVLLFEILRMAEEVEDKVLVFSQSLISLDLIEDFLELAG
RAKEEEKQSPYKGEGKWFRNIDYYRLDGSTNALNRKKWAEEFNDYSNVRGRLFLISTRAG
SLGINLIGANRVIIFDASWNPSYDIQSIFRLYRFGQLKTC
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggcctcagctgaatctacagaccaagtgatggaggaggaagtaggtcagcct
ccgattacagaccagatggaggaggaggaggaggctgggagctcaacagagactgagaga
ccctcctcttctcacaccaagaggaagcctgctgccgcagccaagcaagttggagggaat
gagtcagacacctcggacgagagtggacaggaagatggcgcctcagatgggatgttggtt
gtgcagcctcccgctgggactgacaacaaggaggacaagagcagaggagccatgaagctc
cgagtggacctctcacggagaaagacaggtaaaatgagtaaggcctcagctgaatctaca
gaccaagtgatggaggaggaagtaggtcagcctccgattacagaccagatggaggaggag
gaggaggctgggagctcaacagagactgagagaccctcctcttctcacaccaagaggaag
cctgctgccgcagccaagcaagttggagggaatgagtcagacacctcggacgagagtgga
caggaagatggcgcctcagatgggatgttggttgtgcagcctcccgctgggactgacaac
aaggaggacaagagcagaggagccatgaagctccgagtggacctctcacggagaaagaca
gataccactctgcaggagagaatagactgcaccgcctgtggacagcaggtcaaccacttc
caacgccactcagtgtttgagcaccccatgctccatgtgctcctctgcaagtcgtgctat
aagtattacaccagcgatgacatcaacaaagacgaggacggcatggacgaacagtgcagg
tggtgtgctgaagggggcaacctgatctgctgtgactactgccacaacgccttctgtaag
aagtgcatcctgcgtaacctggggcgcaaggagctgtccatgatcaccgacgacgacagt
aaatggtcctgctatatctgcagccctcagcccctctcagacatcgcctccaactgctcc
aacatcatgaccaagctggagagcttctggcgtacgggacgcaagaaagagagggaggtg
aaagggcacagtaagggtaaaggtcaccaccaccatggtaaagctgtggtgaacggtaag
gagcattcagacgggtcagggaccctcaccttctcctataagaccctgaaagtccccaag
gagctggtgaagaggaccaagaagctgattgagacgaccacagggctcaacaacaccttc
atccatttcatccagcaggctgaggaggagcagggagcaggaggtggcagcgggaccaga
cacagacacctcaaggccttcaggtctgttctggctgacctgaagaaggcccatgctgcc
ctagagaaggacttggagtcacagttcacttcccagggccaggggatgcagaacggggat
gctgtttccaacaccgacggccatgacggccacgatcagatagacaatgggcaagaggca
gaagaggacaaaatggccgacacggaggatgggggtgtgtcagaggacacagagatggag
gggagccccacccccacgcctcaggaccactcagagacagacagccaggctaaagaccag
acagcggtgaaaatggaggaggaggaggaggatggaacagaggaagaggctgatcgggat
aaagacatcgtgtccgtcgggccgtccgtccctgacgagctcttccagatggtcaagagt
ctagcggactccacagggttaacgcccggtaacgacgccacggaactcacagcggctagc
caatcagagaatcccgccactggctcaaccaggaagtcacatgacacccagaaggagaag
gccatgcccaaggttaagaacctgatcctgaaactgacgcctgttcccatggttaccaca
cgcgcctccaggtctaagagcaaggataaggatggagggaaggagaggagtaaggatgga
gggaaggagaggagtaaggatggagggaaggagaggagtaaggatggagggaaggagagg
agtaaggatggaggcgaggagaagagccccagcaagctgaagaggagaaccaagggcagc
tccgagaaggaacgggggaacgaggaggagaaggaacggaaagagagcaaggcctcctcc
atgctgacctctgacccttctaaacaggacgtggactcagattctgacgaggttccagac
atcctggtccagactgcagcggcggaacacagctcggacgaggatgtgcagcaggacgcc
gacagtaaccagggcaacaagcgcgtgggagaggaggtgggagaggaggtgggagagaag
gacaaggagaagactgacaagaagccggcaaccaaacgcaaactgaaagccgacgactcc
gacaactcagagtctgactccgatgaatacgcgaagaagaaaaagaagtcctccacggct
tctgccaaaaagacatccaagaagaagaagaaggactcgggcggctcctctaactccgac
tctgacctggagaaggagatgaagggactcagcaaactggggacgggaaaacggaggagc
agccgtgtgaagaaagaaagagaggagaaggagaacaagggcggggatcggaggcggtcg
tacgaactgaaacgcaaagccagaggtagaggagccaagcaacaagattcatcgtctgat
gacgtggaggaggaggaggaggagggaggagggtctggagaggagagtggagaccagcag
aagattaaacccatcgtggaggagacggtggtagcagggaggggaaccttccaccagtcc
tcaggagaagaaggtaaccaggacgcttctcagatggctgttgatgatgatgatgatgat
ccagagaacagaattgccaagaagatgctgctggcccagatcaaggccaactactcttca
ggagcagaggagagctctgacgaggacggagacgagaaggaacagaggaagggaggagag
gaggaggaggaggaggatgacaacgaggaggaggaggaggaaggggactctggctctgac
gtggatgtgaagaagagtggggggcgtcgccaccggctgctccgccacaaactgacgctg
agcgagggagagtcaggagaggagaaggagaaaccagccagcaaagggaagaaggagacc
aagaggaccagacggaaagtgggtagtgatgactcagcagacttagactctgaggagtcc
gctagcagcagtgagtcaggagttagtgaagagatcagtgaggagtcagaggaggagtca
gaggaggagtcagaggagggcagcagtcgcaggaggaccacgcgctcctccaagaagaag
aagaagaagaaggaggagaggagctacgcccagaagaagaaacgacgccgcatcaaggtc
caggactcttcatccgacgagaagagcgggtcaggagaggacggctcagggaaggaggat
ggagacacacctaaaggacagaggaagaagatcagaaaaatcctcaaggacgacaagctg
aggacggaaacgagggatgccctgaaggaggaggaggagaggaggagacgcatctcggag
agggagcagctcagggagaaactcagagaggtactcgtggtggaggaggcgtccgccgtg
gcttgtccaatcacaaccaagctggtgttggatgaagacgaggagaccaaggagcccatg
gtgcaggtccaccgcaatctggtcactaaactcaaaccacaccaggtcgacggggtccag
ttcatgtgggactgctgttgtgagtcggtgaagaaaaccaacaagaactctggttcggga
tgtatcctggctcactgtatgggcctggggaaaacactgcaggtggtaaccctactccac
acactactgctgtgtgaaaagttagacttttccacggctctgatcgtctgtcctctcaac
acggttctcaactggctcaatgagtttgagaagtggcagtacggcttcaaggatgaggag
agtttagaggtgacggagctggccacggtgaagcgacctcaggagagagcggctgctctg
cagcagtggcaggaggatggggggatcatgatcattggctatgagatgtaccgtaacctc
acacagggtagaaacatcaagagcaagaaactcaaagagaccttccagaagaccctggtt
gacccaggcccagactttgtgatctgtgatgagggccacatcttgaagaacgaggcgtcg
gccatctctaaagccatgaactccatcaagacccgacggagagtggtgctcaccggcaca
ccactgcagaacaacctcatagagtaccactgcatggtgaacttcatcaaggagaacctg
ctggggtcagtgaaagagttcagaaaccgcttcgtcaaccccatccagaacgggcaggca
gcagactccacggaccaggacgtacggatcatgaagaagagggctcacatcctctacgag
atgctcaatggatgtgtacagagaagagactactctgccctgaccaagttcctgcctcct
aaacatgagtacgttgtgtccgtcagagtcacacccatccagtgtactctataccgacac
tacctggagcacttaacaggtgcggggaacgcggtggaggggggtcggggtcgagccggg
accaaactgttccaggacttccagatgcttagcagaatctggacccatccctggtgcctg
cagctggactacatcagcaaagaaaacaaggggtactttgacgaagacagcatggaagag
ttcatcgcctcggagaccgatgagtcttctatgagcatgacctctgaagacgagaaacag
aaaaagtaaccacataagaagcgggggaaagccaggaagaaggacagcgactcagacagt
gatgctctggaggtgataaaggaatggaacaccagctcccgcggaggagacccttccagc
cgcaaccgggcggagccagaggaggaagtgcgtccagcctccagccctggcaccaggagt
cccgactggcacaaagagtttgttacggaggccgactctgagatcctggagcattctggg
aagatggtgctgctgtttgagatcctccgtatggccgaggaggtggaggacaaagttctg
gtgttcagtcagtctctgatctctctggacctgattgaagacttcctggagctggctggc
cgagccaaagaggaggagaaacagtctccctacaaaggtgaggggaagtggttccggaac
atagactactaccgcttggacggctccaccaacgccctgaaccggaagaagtgggcagag
gagttcaatgactacagcaacgtccgaggtcggttgttcctgatctcgaccagggctggt
tctctgggcatcaacctgataggagctaaccgggtcatcatctttgacgcgtcctggaac
ccgtcgtacgacatccagagtatcttcagactctaccgcttcgggcagctcaagacctgc
taa
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