Salvelinus namaycush (lake trout): 120048523
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Entry
120048523 CDS
T07522
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1-like isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04621
NOD-like receptor signaling pathway
snh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120048523
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120048523
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
snh04054
]
120048523
Pattern recognition receptors [BR:
snh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
120048523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_4
LRR_6
WHD_NOD2
AAA_16
NPHP3_N
AAA_22
AAA_30
AAA_18
AAA_29
ATPase
KAP_NTPase
AAA_7
Sigma54_activat
RNA_helicase
NTPase_1
Motif
Other DBs
NCBI-GeneID:
120048523
NCBI-ProteinID:
XP_038850513
UniProt:
A0A8U0QUX6
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All DBs
Position
5:56181175..56188442
Genome browser
AA seq
954 aa
AA seq
DB search
MYIMDSSAEEAPAGLTGHVSTVQMLTLHRALLVSQVKSTQCIMDNLLQSGFLCIEDAEII
QRAATKTDQVRKILELVQSKGEQACEYFLYILYKVYDAYIDLQPWLKEINYQPSDFIRDI
PVKNTDPISRYCEKLRHELGRDTRFIASYAQREETLLEELYTDTLMELLNDRNESLGHLE
GLEQLLGEQGVFNSQAETVLITGDAGVGKSILLQKLQRLWSKRELEQTDAMFFFKFRCRM
FSTFKETDEISLRDLLFKYNCYPDQDADNEVFSYILRFPEKVLFTFDGYDEIQADLDLGN
VPEVVSPEERTHPLLVLINLLCGKLLNGSRKVLTARTGTEVQSRVIRKRVALRGFSPANL
QTYTNLNFKEQEHRNLVSVQLDASPHLCGLCSIPLFCWIVFKSFKHLRSVYDDFELPEAC
MTLTNIFLLLSEVFLSRGATPPPVLLKRNTRCPADTFRAGLRPLTAFSKLALLGMERGGF
VFDQEEVASCGLTEDDLQVGFLRPVNRYDACDNPSTFEFLHLTLQSFLAAFSLVLDEQAS
VGNILKFFTECSRRANTSCLSCVVHCIAGSSKPREKDPFKTNEHLQYANLFLCGLLSKAN
AGLLEHMVPATLLKRKRAVLKSYLSTSVRSHLRGLPLYSTEQEGSKVHVLPNFLWMLRCI
FETGSKEVAQLTAKGITADYIKLGYCNVFSGDCSALNFVLQHRRKRLGVDMDNNNISDYG
VKQLRPSFSKMTVVRLCVNQISDSSIEVLAEELIKYRVVEVLGLYNNHITDIGAKLIAHI
IEECPKLRVVKLGSNKFTSVGGRYLASAIQKSTSIFDVGMWGNSIGDEGARAFAEALRNH
PSLTNLSLSANGITSEGGRSLAEALKGNTMLRIFWLVQNKLSDDVAPDMAELIRSNTGLS
HLWLINNQLTVDGIRQLSEALSHNTSLKEISLKGNCLSEEEEKLFEAEGRLRFH
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtatattatggactccagtgccgaggaagcccctgctggactaacgggccatgtgtcc
actgtccaaatgctcaccttgcaccgtgcgctactggtttcccaggtgaagagcacgcag
tgcattatggataacctcctacaaagtggttttctgtgtatcgaggatgcagaaatcatc
cagcgcgcagccaccaagacagaccaggtgcgtaaaatcctggaattggtccaaagcaaa
ggggagcaggcatgtgaatacttcctatatattctctacaaagtttatgatgcatacata
gacctccaaccatggcttaaagagatcaactaccagccatcagacttcatacgggacata
ccagtgaagaacacggaccctattagtaggtactgtgagaagctgaggcacgagctgggc
cgagacacacgcttcattgcctcctacgcccagcgagaggaaaccctgctggaggagctc
tatacagacaccctgatggagctcctgaatgaccgcaatgagagcctgggccacctggag
ggtctggagcagctcctgggagagcagggtgtctttaactcacaggcagagacggtgctc
atcacgggagacgctggggtgggcaagtccatcctcctccagaagctccagaggctgtgg
tccaagagggagctggaacagacagacgccatgttcttcttcaagttccgctgtaggatg
ttcagcactttcaaggagacagacgagatctcactcagggacctgcttttcaaatacaac
tgctaccccgaccaggatgcggataatgaggtgttcagctacatcctccgcttccctgaa
aaggttctctttacgtttgacggctatgatgagatccaggctgatctggacctggggaat
gtgcctgaggtggtttctccagaggagaggactcacccccttctggtgctcattaatctg
ctctgtgggaagttgcttaatggttcccggaaggtcctgacggctcggacaggcaccgag
gtccagagcagggtgatccggaagagggtggcgctgcgtgggttctctccggccaacctt
cagacctacaccaacctcaacttcaaggagcaggagcaccggaacctggtctcagtccag
ctggatgccagtccccacctctgtggcctctgctccatccccctcttctgctggatcgtc
ttcaagagctttaaacacctgcgctcagtctacgacgactttgagttgccagaggcttgc
atgaccctcactaacatattcctcctgctgtctgaagtcttcctcagccggggggccact
cccccacctgtcctcctgaagagaaacaccaggtgccccgctgataccttcagggcaggg
ctgaggccgctgacagccttctccaagctggctctgctgggcatggagagaggaggcttt
gtgttcgaccaggaggaggtggcctcctgtggcctgactgaggacgaccttcaggtgggt
tttctccgaccggtcaaccgctacgatgcatgtgacaacccttccacctttgagttcctt
cacctcaccctgcagtccttcttggctgcattctccctggttctggacgaacaggccagc
gtaggaaacatcctcaagttcttcaccgagtgcagcaggagggccaatacttcttgttta
tcgtgtgtcgtccactgcatcgctggctcctccaaacccagggaaaaggacccgttcaag
accaacgagcatctccaatacgctaacctcttcctgtgtggactgctgtctaaggctaac
gccggcttgctggagcacatggttcctgcaacgctactgaagagaaagcgggcggtcctc
aagtcctacctgtccaccagcgtgaggtcccacctccgcggtttgccactctacagcaca
gagcaggagggcagcaaggtgcatgtcctgcccaacttcctgtggatgctgcgctgcatc
ttcgagacaggaagtaaagaggtggcacagctgactgcgaagggcatcacagctgactac
atcaagctgggctactgtaatgtgttctctggcgactgcagtgccctcaactttgtgctg
cagcaccggcggaagaggctaggggtggacatggacaacaacaacatcagtgactatggg
gtcaagcagctcaggccttcattcagtaagatgaccgtggtgagattgtgtgtcaatcag
atctcagacagcagcattgaggtactggctgaggagcttatcaaatacagagtggtggag
gttctgggactttacaataatcacattacggacatcggagccaagctaatcgctcatatc
attgaggaatgtcctaagttaagagtcgtcaagcttggcagcaacaagttcaccagtgtg
ggtggcaggtatctggccagtgccattcagaagagcacatctatctttgatgtgggaatg
tgggggaacagcattggtgatgaaggagcaagagcattcgcagaggccctgaggaatcac
ccaagtcttaccaacctcagcctctcagccaatggcatcacttcagaaggtgggaggagc
ttggccgaagcactgaaaggcaacacaatgctcagaatcttctggttggtgcaaaacaag
ttgtcagatgatgtagcaccagacatggcagagctgatcagatccaacacaggtctatct
cacctctggttaatcaataatcagctgacagtggatggaatcagacagctgtcagaggct
ctctcccacaacacatcactcaaagagatcagtttgaaaggaaactgtctttctgaagag
gaagagaagctgtttgaggctgagggaaggctacgcttccactga
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