Salvelinus namaycush (lake trout): 120048631
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Entry
120048631 CDS
T07522
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120048631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120048631
03036 Chromosome and associated proteins [BR:
snh03036
]
120048631
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120048631
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120048631
mRNA degradation factors
5'-3' decay
Decapping complex
120048631
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120048631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120048631
NCBI-ProteinID:
XP_038850660
UniProt:
A0A8U0QU77
LinkDB
All DBs
Position
Sna5:61240697..61257592
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AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTSGSLATAPQPDAHQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFRSADPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacggagaatccaacatccataatgggactgaacaagcccaacggg
cagtttagaggaccactcaagccagttggactaacatcaggatccctggcaactgcccca
caaccagatgcccaccagaagggaggtaacattccccagggcagtgggggcatccgtttt
ggcgatgactggaagaagtgcctgcagcttccacagaaagactgcagatttagaacatca
gatgtgacatcaaccaaggggaatgagtttgaagactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatcctggcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctacacgagagttggccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacgggaggcaccaacctgagggacgac
atcatgcgtctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggcgtggccaaagtggataaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctcatcgaagacatcatcagcttcctggct
aagggtcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctcacgctgaagggc
atcacccagtactacgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccatcatcttctgtaactccacacagagggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtacagaaaccgtgtgttccatgacttcagaaacggactctgcaggaacttg
gtctgcacagatctgttcaccaggggaattgacatccaagcggtgaacgtagtgatcaac
tttgacttccccaagaatgctgagacgtacctgcatcgcatcggcagatcagggaggttt
ggtcacctgggtctggccatcaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcagagttccgctctgccgacccagacgccgaagacgagatcagaggcaaggac
ggcgagttaagcgcagcataa
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