Salvelinus namaycush (lake trout): 120048728
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Entry
120048728 CDS
T07522
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120048728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120048728
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120048728
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120048728
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120048728
NCBI-ProteinID:
XP_038850828
UniProt:
A0A8U0UFZ7
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Position
Sna5:64742199..64753102
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AA seq
959 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSLVSMATVVG
GNPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLLQPQQPQTKPCTPSPPSHPLLSTAP
SLPTPTTPISASPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSAS
LNTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSMESSSIPTSCSSGVTTNGAGTGLG
LLGSSPAHGSLTGGILGLVPGQSVIPGPPQIPLSPVGAAPGGAVGMMGGNGGSMGPIGGV
VGSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDNG
PSLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQ
APEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGS
SAAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERI
RQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtcgctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tccgccaattccgggtcctcttcttcctcctctcttgtatccatggccaccgttgtcgga
ggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtgcaa
caacatcagcctcaacctccacagcaaccagtcctgcagccactgctacaaccacaacaa
ccccaaacaaaaccttgcacccccagcccacccagccaccccctcctctccaccgccccc
tctctccccacacccactacacccatctcagcctccccaaactccctgccccaggtctcg
tctggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatg
acggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctct
ctgaacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagcc
gcgttgggaggcctgggtctgagtaccaccacccagtccagtgtctcaatggagagctcc
tccatccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggc
ctgctggggtccagcccagcacacggctccctgactggggggatcctgggcctggtgcct
gggcagagtgtgatccctgggccccctcagatccctctcagcccggtcggtgctgcccct
gggggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagta
gttgggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcaca
agttacagtgctgtggtggcagagagcacagcagagtctgccttcagcacacccagccaa
tcacagagcagccagccttcctcgctgacctcatcagccagtcagcctatggacaacggt
cccagcctcatcagctccatcaccttgccccccagctctccgtccccctcattttcagac
agtatccccggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgag
ggcctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcag
gccccagagccaccaggggccatggctacagccactaacacacgaaagagaaagcagtgt
caggccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatca
ggtctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcg
tcggctgcccccggcacacccgcggccccccagccctccttgtcggaggtgagcatcccc
ccttccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccag
cagaccatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatc
aggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccc
caccactcagactctatagagttctaccagagactgtctacagagactctcttcttcatc
ttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcag
tcgtggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagact
atcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcag
aggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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