Salvelinus namaycush (lake trout): 120048868
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Entry
120048868 CDS
T07522
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120048868
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120048868
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120048868
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
120048868
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
TPR_IFT122
Motif
Other DBs
NCBI-GeneID:
120048868
NCBI-ProteinID:
XP_038851094
UniProt:
A0A8U0UEV7
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Position
Sna5:complement(71832183..71853407)
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AA seq
496 aa
AA seq
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MEYEEPESPEHITTEEPIKRGDTVSKKTHLTEIEVIPCKICGDKSSGVHYGVITCEGCKG
FFRRSQLPSVSYSCSRQSNCPIDRASRNRCQSCRLQKCVTQGMSRDAVKFGRMSKRQLES
LRAEVERHRQQQQHLQAEAQPALPYHSKACRFRTPHLLQAPAPAYSFPGEPELPPCPTDV
LPYLVCSPGESQAPGLAYQGSCVFHGSGHSDKRGFDSRQPSLDQTIGMGIRSYDPEDPYC
PYPTSLLHIEELCDSIVRSHRDTSQFRLEELQALRWKLFSREELHAYQSKSVDEMWQHCA
VRLTEAVQYVVEFAKRIPGFRGLGQNDQITLLKTGSMEVVLVRMSRCFNTENSTVFFDGK
FGSTELFKSLGCGDLMVAVFDFAHSVCALRLTEQQMALFSSLVLINPDRPCLEDRGRVHR
MRRDLEVCLSHMLRRDNQESLQHKLYQKVSVLQSLCSLHVEKLHWFSQRYPLIVHSVFPP
LYKELFTSDLPSVDSL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgaggagcccgaatcacccgaacacatcactacagaagagccaatcaaaaga
ggagacactgtgtccaagaagactcatttgactgagattgaggtgattccctgtaagatc
tgtggtgataaatcatcaggagttcactatggagtcatcacctgcgagggctgcaagggt
tttttccggcgtagccagctgccgtccgtgtcctactcctgttccagacagagtaactgt
cctatagacagagccagccgcaaccgctgccagagctgccgactgcagaagtgtgtgacc
cagggcatgagccgggatgcggtgaagtttggtcggatgtcgaaacgtcagcttgagtct
ctgcgtgccgaggtggagagacaccgtcagcagcagcagcatctccaggcagaggcccag
cccgcactgccctaccacagcaaggcatgccgtttccggacaccccacctgctccaggcc
ccggctccggcctactccttccctggagagccagagctgccaccctgcccgacagatgtg
ctcccctacctggtgtgctccccaggcgagtcccaggctccaggtctggcctaccagggc
tcctgtgtgtttcatggcagtgggcactcagacaaaagagggttcgactcccgtcagccg
tctcttgaccagacgatagggatgggaattagatcgtatgacccagaagacccctactgc
ccttaccccacctccctgctacacatagaggagctgtgtgacagtattgtgcggtcccat
agggacaccagtcagttcagactggaggaactgcaggctctgagatggaagttgttcagc
agagaggagctccatgcctaccagagcaagtcagtagatgagatgtggcagcactgtgcc
gtgaggctgactgaagcggtacagtacgtggtggagttcgccaaacgcatcccagggttc
cgtgggcttggacagaacgaccagatcaccctgctcaagactggttcgatggaggtggtt
ctggtcagaatgagcaggtgttttaacacagagaacagcaccgtcttcttcgatgggaag
tttggcagcactgaacttttcaagtctctgggctgtggtgatctgatggtggcggtgttt
gacttcgctcacagtgtgtgtgccctgagactgactgagcagcagatggctctcttcagc
tcactggtgctcattaacccagatcgcccctgtcttgaggatagaggcagagtacataga
atgaggagagacttggaggtatgcctcagccacatgctacgcagagacaaccaggagagc
cttcagcacaagctctaccagaaggtgtcagtgttgcagtctctgtgcagtcttcatgtg
gagaagctgcactggttcagccagcgctacccgctcatcgtccactctgtcttccctcct
ctatacaaggagctgttcacctccgacctgccttctgtggactccctctga
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