Salvelinus namaycush (lake trout): 120048872
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Entry
120048872 CDS
T07522
Name
(RefSeq) nibrin-like isoform X1
KO
K10867
nibrin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
snh04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120048872
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
120048872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120048872
03400 DNA repair and recombination proteins [BR:
snh03400
]
120048872
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120048872
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120048872
BRCA1-C complex
120048872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nbs1_C
NIBRIN_BRCT_II
FHA
Yop-YscD_cpl
BRCT
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
120048872
NCBI-ProteinID:
XP_038851099
UniProt:
A0A8U0UG87
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Position
Sna5:71905837..71924565
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AA seq
828 aa
AA seq
DB search
MWTLNPLESGGVTHYLLPDKEYVVGRKNCEVILPNDQSISRAHAHLTATDQALTLKDSSK
YGTFVNEERLSGETPRSLTAGDRVTFGVFHSKFSVQQVTAVVCSSCVDNEGKVSLSQTLQ
LLGGRLTNTWTQDCTHLVMPTVKVTIKTICALLCCRPIVKQEFFTELTKALQQKQPPPKA
ESFFPEIDEPSLNKDEVDLTERPERKELFTGKTFLFLNAKQQKRLSLAVSCGGGRSQLLE
EGSVPVSLLESPLSCVIGMATGNSQALLPPSTKKWADSVGRILQRKGLRFITESEIGLAA
IYVSCDKYCNPSNQMADSESMRMKPTIPGATLSQNAPVDETVMPAASQNITAYAVNTEPS
QGISGVDVAGVSAVGETPERDQSRTTSHLNRSKPSGRELAGTCTVAETMMSSFSASDSAG
GGGSDRKRGELQHPGGEKGDAITRFLATAPRTNGGVQTMSPQKRSSQKQQVSQKGSPQKQ
SALTNFFQPVGKKRPREGEESPTVQSEAKLSRREEDKEKSKRTVPQHSETSNSTHTPAGR
SQGQHSSGAHLFPGQTEALSEGFSNPAQQGLQSRKRKEMEETKGGGASEIEMDELESIMS
EDMDESDEPMSASQGQRLKLTDKSSTNRKQLLETVELTSANKKQRVYPVEPIAANHRSGL
DSEERSSASRRQRAEPVAEVKDEEVSFIESKPVNGVTPGHLEEPETDAKPVKQEASGLGG
ENLPSRLIVVEFKSLTVATPARPKPRPMETHGNVNRKDFKRFRKVPVPGAQGLPNIIGGS
DLLAHNRGKNSELEEWLRDAAEDERQNKKEETLGDDLFRYNPKPTKKR
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtggacactgaaccctttagaatccggaggtgtcacccactacctcctgccagataag
gagtatgtggtggggcgtaagaactgtgaggtcatcctgcccaatgaccagtccatcagc
cgggctcatgctcacctcactgctacagatcaggccctgaccctgaaggacagttctaag
tatggcacgtttgttaacgaggagcgtctgtcaggagaaacccctcgcagcctgacggca
ggggacagagtgacatttggggtctttcacagcaagttcagtgtgcagcaggtaactgcg
gtggtgtgctcgtcctgtgttgataatgaagggaaggtctcactgtctcagaccctgcag
cttctgggtggccggctgaccaacacctggacacaggactgcactcacctggtcatgccc
actgttaaagtcaccatcaagactatctgtgctttgctgtgctgtcggcccatagtcaag
caggagtttttcactgagctcaccaaagccctgcaacagaaacaaccacctccaaaagct
gagagtttcttcccagagatagacgagcccagtctgaataaggatgaggtggacctgacc
gagaggccagaacgtaaagaacttttcactggcaagaccttcctcttcctcaatgccaaa
cagcaaaagcgtctgagtttggcagtgagttgtggaggtgggaggagccagctcttggag
gaggggtctgtccctgtgtcactcctggaatcaccattgagctgtgtgatcggcatggca
acgggaaactcccaagcactactgcccccctccactaagaagtgggcagactctgtgggg
aggattctacagaggaaaggtcttcgattcatcacagagtctgagatcggattggctgcc
atctatgtcagctgtgacaagtactgcaatccctccaatcagatggctgactcagaatcc
atgagaatgaaacccaccatccctggcgccacgctatcccagaatgcaccagtggacgag
acggtaatgccagcagcgtctcagaacatcacagcctatgctgtaaacacagagccttca
cagggcatcagtggggtggacgtggctggggtgagcgcagttggagagacccctgagagg
gaccagagccggaccacctctcatcttaaccgatccaaaccctcaggccgagagctggcc
gggacctgcacagtggcagagactatgatgtcatcattcagcgcctcagacagcgctggt
ggtggcggctcggacagaaaaaggggagagctacaacatccaggtggagagaaaggtgat
gctatcaccagattcctggccacagcccctcggaccaacggaggagtgcagacgatgtcc
ccacagaagcgctcctcccagaaacaacaggtctcgcagaaaggttccccccagaaacag
tctgccctcactaatttcttccagcctgtcggcaagaaaagacctcgggaaggtgaggag
tcccctactgtccaatcagaggccaagctctccaggagggaagaagacaaggagaagtcg
aagaggacagtaccacagcactcagagacctccaactccacacacacccccgcaggcagg
tcccagggccaacacagctcaggtgcacatctgtttccaggtcagactgaggctctgtca
gaggggttctccaaccctgcccagcaggggctccaatccaggaagaggaaggagatggag
gagactaaagggggtggggcttcagagatagagatggacgaactggagtccatcatgtct
gaggacatggacgaatcggatgagcctatgtcagccagtcaaggccagcggttgaagctg
acagacaagagctcaaccaatagaaaacagctcctagagacagtggaacttacctctgcc
aataagaaacagcgggtttatccagtggaaccaatcgcagctaatcataggtcaggcttg
gattcagaagagcgatcgtcagccagcagacgacagcgagcggagcctgtagctgaggtc
aaagacgaagaggtgtctttcattgagtcaaaacctgttaatggtgtgacccctggtcat
ctggaagagccagagactgatgccaaacctgtcaaacaggaagcctcaggtttagggggt
gagaatctccccagcagacttatagtggtggagttcaaatccctcaccgtggcaacaccg
gcaagacctaaaccacgccccatggagacgcacggcaatgtcaacaggaaggactttaaa
cgcttccgcaaggtcccagttcccggtgcccagggtttgcccaacatcatcggagggtca
gacctgttggcccacaaccgaggcaagaactctgagctggaggagtggctgagagacgca
gcagaggatgagcgtcagaacaagaaagaggagactttgggagatgacctcttcaggtac
aaccccaaacccaccaagaaaagatga
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