Salvelinus namaycush (lake trout): 120048894
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Entry
120048894 CDS
T07522
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
snh00535
]
120048894 (col14a1a)
Proteoglycans [BR:
snh00535
]
Extracellular matrix (ECM) proteoglycans
Others
120048894 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_Tor_3rd
Pur_ac_phosph_N
DUF4959
VWA_3
Fn3_nematode
Motif
Other DBs
NCBI-GeneID:
120048894
NCBI-ProteinID:
XP_038851134
UniProt:
A0A8U0R065
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Position
Sna5:complement(73799222..74036423)
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AA seq
2158 aa
AA seq
DB search
MLIVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLATSKLHVSWKEPKGNVDG
YRVLYHSEPGEEKKELRVSKGDNKVVIQDFDAMKEYHVRVLAVRGNQQSRALQGKYAAED
LEGEGGEGESTMPLRLDDTRGTEEINEISGADPFVCTTQAIADIVILVDGSWSIGRLNFR
LVRMFLENLVSAFSVGIDQTRIGLAQYSGDPRIEWHLNAFATKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGIELFAIGVK
NADENELRAIASEPDNTHVYNVADFSIMSSIIEGLTQIVCERVEEQDKEIKGDSAEQETQ
GAPQDLVTSEVTARSFRVSWSQAPGSVEKYRVVYYPATQGGRPEEAVVDGTENSVVLRYL
NSLTEYQLAVFAVYTSSASEALRGSETTLALPMVNGLELYDVTHNSMRARWSGVQGVSGY
MVLYAPLTKDRASDEKEMKVSDAVTDLQLEDLTPATEYTVTVYAMYGEEASDPMTSQQTT
LPLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYRIMYVKTDGLKTDEVDVGPVTSWTLND
LTSAREYEVVIFGIYDEGQSEALSGSFTTDPVPGPLDLQASEVTAESFRVSWGHSAPGIV
LYKLTWAPYDGGDTKEMVLSGDVDSFLLSGLSPNTEYEVMLQAIFRDQSESDAVLVVETT
LARTTMVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPKVDQYRVTYVSLTGDRNEES
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTLGFRVVYQPTSVPGSALETFVGDDVNTMLILNLQSDTEYTVKVISS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCVQWQPHRQADLYRVVIESLLNGQKQE
VRVGGSASRQCFYDLTPNSQYKISVSTQLQEMEGPAATTITTTLPAPTQPPTPPPTSPPR
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQ
FSDDARTEFMLNSYANKETLLDAIRRITYKGGNTKTGRAIKHVKESIFTSEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMDMFGLVENEYSNVEGVSLEPGSF
NSFSCYRLHKDALVSQPTKYLHPEGLPSDYTITILFRLLPDTPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFFNYDYKGDFQTVTFDGPDIKKMFYGSFHKLHMAISKTTARVVVDCK
VVGGKPINAAGNISIDGVEVLGRMVRSRGKRDNSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGDRGEPGNVGPQGLVGDKGP
PGPQGPPGPQGPSGHSIQGPPGGDGEKGEKGDVGLPGPQGIGGSPGGPGRDGPVGQRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGDKGERGDLQSQATV
RALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRTVPGPPGEPGRRGLPGPQGEGGPTGR
PGFPGTNGQDGRPGGRGIPGEKGERGSQGVGTQGPRGPPGPPGLLGEGRTGSQGPAGRPG
SQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGVQQLPHTNYQNYHPTGRYDPRGNYNN
DDEDDEEDEEEEDPFAGYRGYPPQYYQPNYPHPPARPAPQSHSQDTEIRSPGIMMSRFSR
DVVTQRRATANTDQTGQTGQTGQRSDAAADTEREVEVIGEAQTGQRSDAAADTEREVEVI
GEAQTGQRSDAAADTEREVEVIGEAQTGQRSDAAADTEREVEVIGEVQTGQRSDAAADTE
REVEVIGEVQTGQRSDAAADTEREVEVIGEAQTGQRSDAAADTEREVEVIGEAQTGQRSD
AAADTEREVEVIGEAQTGQRSDAAADTEREVEVIGEAQTGQRSDAAADTEREVEVIGEVQ
TGQRSDAAADTEREVEVIGEVQTGQRSDAAADTEREVEVIGEVQTGQTVQPPLYVPVG
NT seq
6477 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagcccctgcccagggtcaagttccagctcccagaagattacgttttaaa
gtgctggctaccagcaaattacatgtgtcttggaaagagccgaaagggaatgtcgacggc
tacagagttttataccacagtgaaccaggcgaagagaagaaggagctgcgggtttcgaag
ggggataataaagtggtgatacaggactttgatgccatgaaggagtaccacgtcagggtt
ctagctgtgagagggaaccagcagagcagagcactacaagggaagtatgcagctgaagac
ctggagggtgagggaggagagggtgagagcacaatgcctctgagacttgatgacaccaga
ggcactgaggagatcaacgagatatctggagcagatccttttgtctgtacgactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcggcaggctcaacttccgc
ttggtccgcatgttcctggagaacctggtcagcgctttcagcgtcgggatcgaccagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatctgaatgccttc
gccactaaagatgcagtcctggatgctgtgaagaacctgccttataagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagcccgagtcaggctcc
aggagcggcgtacccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtg
atcccccctgcccagagcctgagggacgctggcatcgaactcttcgccattggtgtaaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcatcatgagctctatcatagagggactgacccagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagactctgcagaacaggagacacag
ggggcccctcaggacctagtgacatcagaggtgacagccaggagtttcagggtgtcctgg
agtcaggctcccggcagtgtagagaagtaccgtgtggtgtactaccctgctacccaggga
ggacggcctgaagaggctgtggtggacggcacagagaactctgtggttctgcggtatctc
aactccttaacagagtatcagttagctgtgtttgctgtctacaccagctcagctagcgag
gcacttcgtggcagcgagaccacattggctctccccatggtgaacggcctggagctgtac
gacgttacccacaactccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
atggtcctatacgcccccctgaccaaggaccgggcctcagacgagaaagagatgaaggtg
tcagacgcagtaactgatctgcagctggaggacttgactcctgctactgagtacactgtg
acagtctacgccatgtatggagaagaagctagcgatcctatgactagccagcagaccacc
ttgccactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcgtgggaagctgcctctaggaaggtgacaggataccgcatcatgtacgtcaagact
gacgggctaaagactgatgaggtggatgtgggtccagtcacgtcctggactctgaatgac
ctgacgtctgcaagggagtatgaggtagtcatctttgggatctacgacgagggccaatca
gaagccctctctggcagcttcaccaccgaccctgtgccaggccctcttgacctccaggcc
agtgaggtcaccgcagagagcttccgagtcagctggggtcactctgctccgggtatcgtc
ctctacaaactgacctgggctccttatgatggaggggacactaaggagatggttctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacggagtatgaagtgatg
ctccaagccatcttcagagaccaatcagagagtgatgcagtgttagtggtggagacaaca
cttgccaggacaacaatggttgccactacaacgccagtggtgcgtcaggcggtgagaggc
ctgcaggtccaggaggagaccacctacagcctggaggtgtcatggcagctggaggatcct
aaggtggaccagtacagagtcacctacgtcagcctcacaggagaccgcaacgaggagtca
gtcctggtgcctgggcagcagaccacagtccttctccagcctctgctgtctgacacagag
cacaaggtgacggtcaccccagtctacacagatggacaggacggcatcagtgtgtcttct
gtgggcagaacattgcccctctcggcgcctagcaacctgagggtgtctgaggagtggttc
agccgcttccgcatcacctgggacacgcctccttctcccaccttgggcttcagggtagtc
taccaacccacctctgtgccggggtcagctctggagacctttgtgggagacgacgtcaac
accatgctgatcctgaacctgcagagtgacactgagtacactgtgaaggtcatctcttcc
tacaccacgggatccagccaaccactccagggcaccgccaagacattgtacctgggcgtg
accaacctgaacacctaccaggtgatgatgtccagtatgtgtgtccagtggcagccccat
cgtcaggctgacctctacagggtggtcatcgagtctctgctcaatggccagaaacaggaa
gtgagggttggaggctctgcgtctcgacagtgtttctatgatctgacccctaacagccag
tataagatcagtgtttccacccagctacaggagatggaggggcccgccgccaccaccatc
actactacactccccgcccccacccagccaccgacaccaccccccacgtcacccccccgg
ccgaccataccgcccgccaaggaagtctgtaaggcagccaaagctgacctggtcttcttg
gtggacggctcttggagcatcggagacgacaacttccagaagattatccgcttcctgtac
agtacgatgggagctctggatctgattggtcctgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggacagagttcatgctgaactcatacgctaacaaggaaacgctg
ctcgacgccatcaggcgaatcacatacaagggagggaacaccaagacaggccgagccatt
aagcatgtgaaggaatctatcttcacctcagagggaggggtgaggaggggcgttcctaag
gtactggtggtcctcaccgatggccgttcccaagacgatgtcaacaaggtctccaaggag
atgcagatggaaggctacatcatctttgccatcggctttgctgatgcggactacggagag
ttggtgaacatcgccagcaaacccagcgacagacacgtcttctttgtggacgatttggac
gctgtcaagaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccatcggttctgatgagtggcaacactatggcaggcttcaggatgatggacatgttt
ggcctggtagagaacgagtacagtaacgtagagggagtgtccctggaaccaggctccttc
aacagcttctcctgctacagactgcacaaagacgccctggtctcacagcccaccaagtac
ctccacccagaaggtctgccctctgactacaccatcaccatcctgttccgcctgctacca
gacaccccccaggagccctttgcattgtgggagatcctcaacaaagacaatgaacccctg
gtgggggtcatcctggacaatggtgggaagactctgacattcttcaactacgactacaag
ggagacttccagacagtcacttttgacgggcctgacatcaagaagatgttctatggcagt
ttccacaagctccacatggcgatcagtaagaccacagccagggtggtggttgactgtaag
gtagtgggaggaaagcccatcaacgctgctggcaacatcagtatagacggggtggaggta
ctgggacgcatggtgcgatccagagggaagagggacaactcagctccgttccagatccag
atgtttgacattatctgcagcacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcccggacccacaggacctcccggaggtgctggtatcagaggggccagg
ggagatcgaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcct
ccaggaccacagggcccccctggtcctcaagggccgagtggacattccatccagggacca
ccgggtggtgatggtgaaaagggagaaaaaggagatgttggtttaccaggacctcagggt
attggtgggtctcctggcggaccaggaagagatggaccagttggacagaggggcctgcct
gggaaggatggaccacaaggacagcagggtactacagggcccgtcggcagtcctggagcc
cccggggcccctggtggaagtggctctcctggacccctgggagaccagggaccacctggc
tctgctggtaccaaaggagacaagggtgaacggggagacctccagtctcaagctaccgtc
agggccttagcacgccaagtgtgtgagcaactgattcagagtcacctgtctcgctacagc
tccatcctgaaccagatccccagccagtcagtgtctgtgaggactgtaccgggacctcca
ggagagcccggtcgcaggggtctgccagggccacagggagagggggggcccacaggcaga
ccagggttccctgggaccaacggacaggatggacgaccgggggggagaggtatcccagga
gagaagggggagagggggagtcaaggtgtggggacacagggccccagaggtcccccaggg
ccaccaggtcttctaggagagggccgtacaggcagccaaggccccgccggtagaccaggc
agccagggcaccccagggcgaccgggcacccctggatccacgggccctgctggcgctgct
ggctactgcgaccagaactcctgtttgggttacaacgttggagtacaacaactcccccac
accaactaccaaaactatcaccccactggccgttatgacccccgtggaaattacaacaac
gatgatgaagacgatgaggaagatgaggaggaagaggacccattcgctgggtatagaggc
tacccccctcagtactaccagcccaattaccctcacccccctgcacgccctgcaccccaa
tcccactcccaggacactgagataaggtccccagggataatgatgagccgtttctccaga
gatgtggtcacacagagaagagccaccgctaacacagaccagactggacagacaggacag
actggacagaggagcgatgctgcagcagatactgaaagagaggtggaggtgattggagaa
gcccagactggacagaggagcgatgctgcagcagatactgaaagagaggtggaggtgatt
ggagaagcccagactggacagaggagcgatgctgcagcagatactgaaagagaggtggag
gtgattggagaagcccagactggacagaggagcgatgctgcagcagatactgaaagagag
gtggaggtgattggagaagtccagactggacagaggagcgatgctgcagcagatactgaa
agagaggtggaggtgattggagaagtccagactggacagaggagcgatgctgcagcggat
actgaaagagaggtggaggtgattggagaagcccagactggacagaggagcgatgctgca
gcagatactgaaagagaggtggaggtgattggagaagcccagactggacagaggagcgat
gctgcagcagatactgaaagagaggtggaggtgattggagaagcccagactggacagagg
agcgatgctgcagcagatactgaaagagaggtggaggtgattggagaagcccagactgga
cagaggagcgatgctgcagcagatactgaaagagaggtggaggtgattggagaagtccag
actggacagaggagcgatgctgcagcagatactgaaagagaggtggaggtgattggagaa
gtccagactggacagaggagcgatgctgcagcagatactgaaagagaggtggaggtgatt
ggagaagtccagactggacagacagtccaaccacctctctatgtccctgtgggttaa
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