Salvelinus namaycush (lake trout): 120048903
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Entry
120048903 CDS
T07522
Name
(RefSeq) protocadherin-11 X-linked-like
KO
K16498
protocadherin delta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03273
Virion - Lassa virus and SFTS virus
snh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120048903
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
120048903
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120048903
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120048903
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120048903
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120048903
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_FAT4_N
Ig_Cad99C_N
Cadherin_2
Ig_CLSTN
Fibulin_C
TMEM154
DUF6249
Ig_TRS130_1st
Motif
Other DBs
NCBI-GeneID:
120048903
NCBI-ProteinID:
XP_038851148
UniProt:
A0A8U0UFU3
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All DBs
Position
5:3473770..3515126
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AA seq
1112 aa
AA seq
DB search
MDLAGQAHVLVVLLTCLVLLSWAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDFKLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFNKKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVTIS
DVNDNRPVFKDSEVEVNIPENAPIGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKRHF
SIDSTTGLITVKQPLDREAAPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDKDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSFTV
MARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSDAG
DNSVITLSILNGKDNFLIDPQTGVIKPNLTFDREQQSSYTFMVKAIDGGQPPSTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSP
RGLFAIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSNAT
FIQEQLRKSLETPLDRNVGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVTIEESKPDDASQEHING
TLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKHHV
IQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTSGQIHTRQSEQVPGLDIPA
PAVRTGPRTGHPSPCSQNRSQDWTCLPLQSEQGPGLDIPAPAVRTGPRTGHACPCSQNRA
QDWTCLPLQSEPVAGLDIPAPAVRTGPRNDIS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaggtcaagctcatgtgctggtggtgttactcacctgcctggtcttgctg
tcctgggcccaagagaaggactacacggtgagagaggagcagcccgagaatgttcgcatc
gggaacctacggaaggacttggacctgaaccttgaccctgacttcaagctgtcctcgcca
ctgcagttcaagcccgtctacaaaacgggcgatgtgcctttggtgagggtagaggccaac
accggggagatcttcaccacggctcatcgtatcgaccgagagaagctctgctcgggagta
ttcaacaagaagcgctgcttctacgagatcgaagtagccgttctgcccgacgagatcttc
cgtctggttaagatccggttcctgattgaggacatcaatgacaacgctccactcttccag
tccaccgtaataaacatttccatcccagagaacactgccatcaacacccggtaccccgtg
ccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaacttgtcaag
agtgtaagtgagtttggcctagacatcatcgagaccccagagggagacagatggcctcag
ctgatcgtccagcagagcctggaccgcgagcagaaggacaccttcgtcatgaagatcaag
gtggaggacggaggaacgccacccaagtccagcacggccatcctccaggtcaccatctcc
gacgtcaacgacaatcggccggtcttcaaggacagtgaggtggaggtgaacatccccgag
aacgcccccataggaacctccgtcacccagctccacgccacggacgcagacctcggctcc
aacgcccagatccacttctccttctccaaccagatctcctcatccaccaagaggcatttt
tccatagacagcaccaccgggctgatcactgttaagcagcccttagacagagaagccgct
ccggtccacaaactcatcgtcctggccagcgatggcagctccaccccctccagagctacg
gttatcgtcaacgtaacggacattaatgacaacgttccgtccatagacactcggtatata
atgaaccttgtaaatggaacggttctactgtcagagaacgctcctctcaacacaaaaata
gccctaattacagtgacggacaaggactcggatctgaacggcaaagtgacttgttacact
gaccatgacgttcctttcaggttaaagccagtctttaatgaccagttcctgctggagact
gcggcccccttagattacgaaacaaccagggaatatgcaattaagatagtagcgtcggat
tcagggaagcctcctttgaacacttcagcgatggttttaataaaaattaaggacgagaat
gacaacgctcccatcttccctcagcctgagattcagctgtccataccagagaacaatgat
ccatccacgcagctcataaagatcagtgccacggatgcagacagcggacataatgcagag
attatttattctcttggccctgacgcgcctgatgggtttaacatagatagacggtcagga
atcctctccgttggcaaacgcctggatagagagaagcaagagaagtattcgttcactgtc
atggcgagggacaatgggtctacttcgctgcagagcaatgtcacagtgaggttaatagtg
caggacctcaacgacaacagcccagctttcacccatcctgagtataacttctacgtgcct
gagaacctgcctctgtacgggaccgtgggtctgatcaccgtcacagattctgacgcaggt
gacaactctgtcataacactgtccatcctgaacgggaaagacaatttccttattgatccc
cagaccggtgtaatcaaacccaacctcacatttgatagagagcagcagagctcatacact
tttatggtgaaggctatagatggagggcaaccacccagcacttcatacgccaaggtcacc
ataaacgttgtggatgtcaatgacaatcgacccgtttttgttattccctcgtccaactac
tcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagggtgttcgct
atagacaatgacactggcatgaatgctgagctgcagtacagcatcattgggggatcacca
agagggctgtttgccatagacaaaacaactggtaatataactctgcaggagaagatagtc
tcagccgatcagggtttacacaggctagtggtgaaagtcaaagacctgggccagccagag
tccttacacgcaatcgccctcattcacctgttcattaacgagactgtatccaacgctacg
ttcattcaagagcagctacgtaagagcttggagactccattggaccgcaacgtgggagac
agtgaggtcacaccccaagccaacggatacgtgattgttgtcatcgctattatagctggg
actatgacagtcatcttagtcattttcgtgacagccttagtgcgctgtcgtcagacgccc
aggcacaaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaaccaggag
aaccgtcaaatcaagaagaaaaagaagaaaaagaagagatcccctaagagcctcctcttg
aactttgtcaccatagaagaatccaagcctgatgatgccagccaggagcacattaatgga
accctggacctgcctgtggagctagatgagcagaccatggggaaatacaactgggccact
acgccgaccaccttcaaacctgacagtccagacttagccaagcattacaagtctgcctcc
ccccagccaaccttccaaatcaaaccagagaccccgatggcgccaaataaacaccacgtg
attcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactccaagtgc
tcctccaccagctcagacccgtactcggtctcagagtgcagctgtcaggggggattcaag
acttctgggcaaatccacaccagacagtcagaacaggtcccaggactggacatccctgcc
cctgcagtcagaacaggtcccaggactggacatcccagcccctgcagtcagaacaggtcc
caggactggacatgcctgcccctgcagtcagaacagggcccaggactggacatccctgcc
cctgcagtcagaacagggcccaggactggacatgcctgcccctgcagtcagaacagggcc
caggactggacatgcctgcccctgcagtcagaaccggtcgcaggtctggacatccctgcc
cctgcagtcagaacagggcccaggaatgatatctcataa
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