Salvelinus namaycush (lake trout): 120048976
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Entry
120048976 CDS
T07522
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120048976
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120048976
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120048976
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120048976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
Caskin1-CID
MukB
Motif
Other DBs
NCBI-GeneID:
120048976
NCBI-ProteinID:
XP_038851166
UniProt:
A0A8U0QZ09
LinkDB
All DBs
Position
Sna6:complement(15912196..16213840)
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AA seq
2274 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFLILVRVRSTNQPIYQGGCHYPNIA
MPSSGVLPWLQGMMCNIGNPCVNHPTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSILN
KFQRLSEDVDHWALIIQTSNPANGQPIPLRSILNDNEMFTAYLKKNLSMPLTVVNSLMNS
NIQRNEMMGISRQDDLRTTLCNGTTLDRYVEFTSVSDKEAFQNVSCSLPAQKMRRAKEVF
LQNLDTRKILTNMNKLQNSMLFKSANTLDFKADAFGSLNMLLCGKSPDSNSTNTTMNFSA
SGLMKNDTENSELPDARNRSSTGSSGSHASAASTGSRASAKAAGPLLVPGIVLLVGVLRP
EPRISAFCKILIDTLEGTPGLRVVWSTFRPLIQGKVLYTPDTPATRLMVKEANSTFNALA
MIKELAEAWEDFGHLVWDYFQSGRQVNALRALLDNPVFVALLNQRLKGTRWTAELLANVL
YNGSPEGRPTGMPPNDWRNVFNATSQILDLLKKFIGCLNLDKFEAADSERHLMTRALELL
ESNRYWAGIVFEDLNPAASHPPPYVKYKIRMDIDKGERTNKIKERGWSPGARGNSFNDLR
YIWGGFAYLQDMMDHGIIRAHTNKSQPLGVFAQQMPYPCYVDDVFIQSIGNMLPMFLVLP
FMYTVCMTIKGLILEKEARLKETVRMMGLRSSTYWLSWAVSSMLPLAVSALLLTLILKYG
KVLQYSDPSVIFVFMLVFCMATIMECFLISVFFSKANLAAACGGLIYFVLYLPHLLCYAW
RDVLGFQVKISVSLLSCVAFGYGCENFAKYEEQGIGIQWSNIAQNPEGDRYSFIVSIIMM
LIDALIYWLLTWYIENVFPGQYGIAKPWSFPFTASYWCGTSAVPNADPSQFKDPMEYNGI
VANYLEKPPPNMKAGVSIRNLVKIYKTGKKLAVDGLSVDFYENHITSFLGHNGAGKTTTM
SILTGLFAPTSGTALINGYDIRTDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYARLKGR
SRDEVKTEMDQMIKDVGLPHKRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVD
PYARRGIWELLLKYKKGRTIILSTHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGS
GYYLTLVKAGNEQITNERSGVKQGQVKEKEETDETLRRTSLDEGIASQNWSNSDPTELTA
VSKLVRRHVPEAVFLESIGQEITYILPYSGAKDGTFALLFKELDLEMADIGFTNYGISDT
TLEEIFLKVAEDTGVDVEIPDNKAPLVRDKTRSSRESKQQRQSLTNVGNTSDKVTGKRAE
VKAKFTSRVEDVERVANVNGKGSSVIMGWELIRRQFLALFIKRFHHARRSRKGIIAQVIL
PAVFVCLSLIFSVIIPPFAEYPNLELQPWMYGLPQTTFYSNDGPPNNTEVAQVVDSLVNN
PGFGTRCMANNPIPNLPCVPIDSKWITPSVEPSINNILINGTWSMANPSPNCQCSTPQKT
IMLPDCPPGAGGLPPPQRTQNTTDTLQDLTGRNMTDFLLKTYEKAGRKRYGGISVGGVNS
QVRMTEPEIEAVIRDLKSLFNSPQDNTTEQILLNVETLLKELGTRDNVKVWFYNQAWHGI
VSFLNVANNAILRGNLPTGRDPREYGISSSSHPLNLTRVQLSYQALAATSTDVVVSICVI
FAMSFIPASFVLFLIQERVNKAKHLQFVSGVNPVVYWVANFAWDICNYIVPCLIVIVIFL
CFQQKAYVSPPNLPALIWLLVMYGWSITPMMYPASFIFSVPSTAYVVLTCVNLFIGINGS
LATFVMELFDDDKISHINDIVKQVLLIFPHFCLGRGLIDMGKNQAMATVFERFGEDRFQD
PLSWDMVGKNLCAMAIQGAVMFTITLLIQYKFCYKPRLISGKSFSKEDEDVDVARERARV
HKGGAENDLLRICDLSKVYSWKNIPAVDRVCLGVPAAECFGLLGINGAGKTTTFKMLTGD
IAVSGGEAFLNGYSIRTEMRDVHQNMGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVT
MVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRF
LWDCILSVIKEERSVILTSHSMEECEALCTRMAIMVNGQFKCLGSIQHLKSRFGDGYTVI
VRVGGSPPALGPVEEFVHETFPGSVLKEKHHNTLQYQLPLSKGALVSIFSQFTTHQQRLG
VEDYSVSQTTLDQVFVNFARYQHEEDKHATYDNKVDVSDEMPMKTQNSPVPENA
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaacttggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagttgttgtggcctctattcctgttcttaatcctcgtc
agggtgagatcaaccaatcaacccatttatcagggcggatgtcattatccaaatatagcc
atgccgtcctccggggtgctgccttggcttcaaggcatgatgtgtaacataggcaacccc
tgtgtaaaccatcccacgccaggagaagcaccaggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagctgcagtcacttctggcaaacagatccatcctaaac
aaattccagaggctttcagaagatgtggaccattgggccttgattatacagacatctaac
cctgcaaacggtcagcccattcctctgagaagtatcctaaatgacaatgaaatgttcacc
gcatatctgaagaagaacttgtccatgccattgacagtagtcaacagtctgatgaactca
aatattcaacggaatgagatgatgggcatttcaaggcaagacgacctgagaaccaccctc
tgcaatggaacaactcttgatagatatgtggaattcaccagcgtgtctgacaaggaggcc
tttcagaatgtcagctgctccctcccagcacaaaagatgagacgagccaaggaagttttc
ctacaaaacctggatacaaggaagatactcaccaatatgaacaagttgcagaactcaatg
ttgttcaagtccgctaacacgctggatttcaaagcggatgcgtttggtagtctgaacatg
ctactatgtggcaaatctccagactccaactccacaaataccaccatgaatttctctgct
tctggactgatgaagaatgacacagaaaacagtgaattacctgatgccaggaaccgcagt
tccactggctcatcgggctcccatgcctcagctgcctcgacgggttcccgcgcctcggca
aaggcggctggcccgctcctggtccccgggatcgtccttctggtcggcgtcctgcggccg
gagccacgcatcagtgccttctgcaaaatattgattgatactcttgagggaactcctggc
ctacgtgttgtctggagtacgtttcggcccctaatccaagggaaggtcctctacacccct
gacacacctgccactcgactaatggtgaaagaggcaaatagcacattcaatgcattggcc
atgataaaagagctggcggaagcttgggaggatttcggacatcttgtttgggactacttt
caaagtggccgccaagtcaatgcactgcgggccctgctggataaccctgtgtttgtagcc
ttgctcaaccaacggctcaaaggcacaagatggacggcagaactgctcgccaacgtcctg
tacaatgggtcccccgagggtcgccccacgggcatgccgccgaatgactggcgcaacgtg
ttcaacgccaccagccaaatcctggacctcctgaagaagttcattgggtgcttgaacctg
gataagtttgaggctgccgacagtgagagacatctcatgactagagccttggagcttcta
gagagcaataggtactgggctggtatcgttttcgaagacctcaaccctgccgccagccac
ccccctccttacgtcaagtacaagatccgcatggacattgataagggggagcgtacgaat
aagatcaaagaaaggggatggtctcctggggcccgtggcaactcctttaacgacctgcgc
tatatatggggaggcttcgcctatctgcaggacatgatggaccatggcataatacgggcg
cacacaaacaaatcccagccgctcggcgtgtttgcccagcaaatgccatatccctgctac
gtggacgacgtcttcatccagagcattggaaacatgcttcccatgttcctagtgctgccg
ttcatgtacaccgtctgcatgaccatcaagggcctcatcctggagaaggaggcgcgtctg
aaggagaccgtgaggatgatggggctgaggagctccacctactggctgagctgggccgtg
tccagcatgctgccgctggctgtcagtgcgctcctcctcaccctcatcctcaagtatggg
aaggtgctgcagtacagcgacccctctgtgatcttcgttttcatgctggttttctgcatg
gccaccatcatggagtgtttcctcatcagcgtgttcttctccaaggccaacctggcggca
gcgtgcggtggcctcatctacttcgtcctctaccttccacacctcctctgctatgcctgg
agggacgtcttggggttccaggtcaaaatctctgtgagtttgctgtcgtgtgtggccttc
gggtatggctgtgagaacttcgccaagtacgaggagcagggcatcggtatccagtggagt
aacattgcccaaaatcctgagggagatcggtacagtttcatcgtgtccatcatcatgatg
ctcatcgacgccctcatctactggctgctcacttggtacatcgagaacgtcttcccaggc
caatatggaatagccaagccgtggtccttccctttcacggcctcctattggtgcgggacg
tctgcggtgcccaacgctgaccctagtcagttcaaggatcccatggaatacaatggtata
gtagccaattatttggaaaagcccccacccaatatgaaggcaggggtctcaatcaggaac
cttgtgaagatctataaaacggggaaaaagcttgctgtggatggacttagtgtggacttc
tacgagaatcacatcacctctttccttggccacaatggcgcaggaaaaacaaccactatg
tcgatcttgacgggactgttcgctccaacatcggggaccgctctcataaatggttacgat
atccgcacggacatggacaccattaggaagcatctgggaatgtgccctcagcacaacgtc
ttgttcaatgaccttacagtagaggagcacatctacttctacgccagattaaagggtcga
agtcgtgatgaagtgaaaacggagatggaccaaatgatcaaggatgtagggctgccgcac
aaacgcaaggaacttgccaagaacctgtcagggggaatgcaaaggaaactgtcggtggcc
atcgcattcgtgggaggatccaacatcgtcatcctggatgaacccacagcaggggtggac
ccgtacgcccggagagggatatgggaacttctgttgaagtacaaaaaaggtcgcacaatc
atcctctccactcatcacatggatgaggccgacatcttgggagaccgcattgccattatc
tctcacggcaagatgtgttgttacggctcctccctgttcctgaaaaagtactttggcagt
ggctactacctcactctggtcaaggccggaaatgagcaaattaccaacgagcgcagcgga
gtcaagcagggccaggtgaaagagaaagaggagactgatgagaccttgaggagaaccagt
ctggatgaagggattgcaagccagaactggagcaactctgaccccacagagcttacagct
gtcagtaagctggtgcgtcggcatgttcccgaggcagtgttcctggagagcatcggccag
gagatcacctacatcctgccctacagcggggccaaggatggcaccttcgccctccttttc
aaagagctggacctggagatggccgacattggcttcaccaactacggcatctcggatacc
acactagaggagattttcctcaaagtggcggaggacacaggtgtggatgtggaaattcca
gataacaaagcacctttggtaagagacaagacaagaagttcaagggaatccaagcagcaa
cggcaaagcctgaccaatgtcgggaacacttcagacaaagtgactgggaaaagggctgaa
gtgaaagccaagttcacaagcagagtggaggatgtggagagagtggccaatgtgaatggg
aagggctccagtgtgataatgggatgggaactaatccggagacaattcctggccctcttc
atcaaacgtttccaccacgcacgcaggagccgcaaaggcatcattgctcaggtgattctg
ccagctgtcttcgtctgcctgtctctcatcttttccgtcatcatcccgccttttgctgag
taccctaatctggagctgcagccatggatgtacgggctgccccaaacgacattctacagc
aatgatggaccgccaaataatacagaggttgctcaagtggtggactctttggtgaataat
cctgggtttgggactcgctgcatggctaacaaccctataccgaatctcccgtgtgtcccc
attgattctaaatggatcactccctcagtggaaccctctatcaacaacatcttaatcaac
gggacctggagcatggccaacccttcccctaactgccagtgcagcactcctcaaaagact
atcatgctaccagattgcccacctggagccggggggctgcctccccctcagaggacccag
aatactacggacacactgcaggacctgacagggaggaacatgacagacttcctcttgaag
acgtatgagaaagcaggcagaaaaaggtacggagggatttccgttggaggagttaactcc
caagtcaggatgactgaaccggaaattgaagctgtaatcagggatttgaaaagcctattc
aattccccccaggataacacgactgagcagatccttctgaacgtcgagacgctcctgaaa
gagctcgggaccagggataacgtcaaggtgtggttctacaaccaggcgtggcacgggatc
gtttcgttcctcaacgtggccaacaacgccatcctgaggggcaacctgcctacgggccgt
gaccccagggagtacggcatctcctcctccagccaccctctcaacctcaccagggtgcag
ctctcctaccaggcactggctgccacctccaccgatgtggtggtgtccatctgtgtcatc
ttcgccatgtcctttatcccagcgagcttcgtcctcttcctcatccaggagcgcgtcaac
aaagccaagcacttgcagtttgtcagcggcgtcaacccggtcgtctattgggtcgccaac
ttcgcctgggatatatgtaactacatagtcccgtgtctaatagtcatcgtcatcttcctg
tgcttccaacaaaaagcctacgtgtcccctcctaacctaccagctttgatttggctactt
gtaatgtatgggtggtctatcacacccatgatgtacccagcctcgtttatcttcagtgtc
cccagcacggcctacgtggtgctgacctgcgtcaacctcttcatcggcatcaatggcagc
ttggccaccttcgttatggagctgttcgatgatgataaaatctcgcacatcaatgacatt
gtgaagcaggtgctgctgattttcccgcacttctgtctgggtcgagggctcatcgacatg
ggcaagaaccaggccatggccactgtgtttgaacgcttcggggaagaccgtttccaggac
cccctcagctgggacatggtggggaagaacctgtgtgccatggccatccagggggcagtc
atgttcaccatcactctccttatccagtataaattctgctacaaacccagactgatttct
ggaaagtcattctccaaggaggacgaagatgtggacgtggctcgggaacgtgcacgcgtc
cataaaggcggcgccgagaatgacctgttgagaatctgcgatctctctaaggtgtactca
tggaagaacattcctgctgtggacagggtgtgtttgggcgttccagccgcagagtgcttt
ggactactagggattaacggggcaggaaaaacaaccaccttcaagatgctgacgggggac
atcgccgtctccggaggagaggccttcctaaacggatacagcatacggacagagatgagg
gacgttcaccagaacatgggctattgcccgcagtttgacgccctcaacgaccttctcacc
ggacgagagcatctggagttctacgccagactacgaggcgtaccggagaaggaagtcacc
atggtggcagagtggggcatccagaagcttggcctggtcaaatattccaacaagtcagcc
ggtacctacagcggagggaacaaacgcaagctctccaccgccatggctctgattggttgt
cctcctgtggtcttcctggatgagccaacgacagggatggaccccaaagccagacgcttc
ctgtgggactgtatcctgagtgtcatcaaagaggaacgctcggtcatcctaacatcacac
agcatggaggagtgtgaggccctgtgcacacgcatggccatcatggtgaatggacagttc
aagtgtctgggcagcatccagcatctcaagagcaggttcggggacggctacactgtgatc
gtgagggtgggcggctcaccccccgctctgggccccgtggaggagtttgtccacgagacc
tttccgggtagcgtactgaaggagaagcaccacaacactctgcagtaccagctccccctc
agcaagggcgctctggtcagcatcttcagccagttcaccactcatcagcagaggctgggt
gtggaggactactctgtctcccagaccactttggatcaggtctttgtcaactttgccagg
taccaacatgaggaggacaaacatgctacttatgacaacaaagtggacgtgtccgacgaa
atgccaatgaaaactcagaactcacctgtcccagagaacgcctga
DBGET
integrated database retrieval system
