Salvelinus namaycush (lake trout): 120049072
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Entry
120049072 CDS
T07522
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120049072
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120049072
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Motif
Other DBs
NCBI-GeneID:
120049072
NCBI-ProteinID:
XP_038851249
UniProt:
A0A8U0UGD7
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Position
Sna6:30978173..31008287
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AA seq
1852 aa
AA seq
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MLVVREDDQNWATVESAKDIAQMMSAAVIMLCGEGTQSSTPMLKKTPGKRALAFYGNTCT
PAMTLSLRPSCDVTPEKPPGPTLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHKLTA
SSTCGIEKPERFCIVGHLEEEKKCFVCDSREKYDERMNHTTSHSIENLVTTFAPNRLKTW
WQSENGVENVTIQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGKKWQVYRYYSYNCE
SAFPGISVGPMVKVDDIICDSRYSDIEPSAEGEVIFRVLDPAFEIEDPYSPRIQNMLKIT
NLRVQFTKLHTLGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCAPVDGIHVGTE
GMVHGHCMCNHNTEGLNCEHCKDFYNDLPWRPAEGRNTNACKMCECNYHSRSCHFDMAVY
LSTGNVSGGVCDECQHNTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPTGSLQGGVC
DGRTDVSAGLIAGQCRCKTSVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPC
DMDTGNCFCKRLVTARNCDRCLPQHWGLSNDMDGCRPCDCDQGGAVNNDCSPISGQCQCR
EHMYGRRCDQVESGFYFIALDHYTYEAEDAKHGPGVTVVPRPSPPNRSPTWTGAGFVKVP
EGAHLEFHINNLPDSMDYDMLIRYEPQLPEQWEQVEIRVIRPYSMRVEQPASPCENTLQG
GDQQLVSLPPGSRHVLLPRPVCLEKGWNYTVRLSLPLYSSLSDVQSPYTLIDSLVLIPRV
RELLLFEGSQGEGAWDTFQRYRCLESSQSVIKSPMTDICNNYIFSVSALLHQGAMACQCD
SQGSLSAVCDPSGGQCQCRPSVAGRNCDRCAPATFLFSPLGCRRCECSPTGSVNAFCHEA
TGQCECIPGASGRQCAHCLPGYWGFPQCQPCQCNGNSDYCHPQTGECQGCHAFTTGHMCE
RCLDGYHGDPVLGLGGHCRPCMCPDGPGSGRQYADSCYQTANNYQLVCVCSPGYRGARCD
ECAPGHYGNPQVPSGRCLPCQCNDNIDQLDPGSCDARTGVCLKCLHHTEGYGCQRCKLGY
YGNAASQSCRKCMCYSVGTTSETCPSPGECHCDLQTGQCPCRTNVIGQNCDSCAPDTFNI
GSGQGCQTCDCDPTHSFGTSCNELSGQCSCRSGFGGRKCNECRDKFWGDPEVKCQACDCD
LRGIASEQCHRSSGQCVCVEGVSGPRCNECARGYHGTFPACERCHQCFAEWDRVVGELSN
QTQRLKDHVTELQTSGVTAPYKDTVSSLEISANAISAIVENNPAIQKMEDVQQMMQQATE
LVAGLNERLNVSEDSLSRLVVNANDTEASLDALRKQAQELERTVTDIRDHIKTVKNSNIE
GAMDTITKAHLESKRAEIRANQSTSYPDNTLEQSATLRRQAEARLSQNQAEFDLRQQKHT
ERLERLATELNTLDLSELSKQTCGAAGGEEGCAASPCGGVGCVSEDGTLRCGGEGCDGLV
TQTQSTLKTAKDFDQEILSTVQEVDKLSRMVWEVNVRADEVKLSAQEVLLKSNQSRDRVE
ESNEQLRSLIKEIRDLLTNDRAKVEVIEAVSNEVLALEMPTSSEQLEALTKEIRDRVGTL
TSVEDILSQSANDIHTAERLLEQARTASQEVSEMKETAALVKEALETTEPAQNAAIDAVK
QAHNNTRGTLDLITSVESEMAESELRLSNATLRLLQLERDVTLLRESSLGTSHRTQHTER
LSETARQDAEQALQEFDLEVKGKYSVVEGLVVTKAEGVSDARKRAELLQQEAKELLTQTS
VKLQRLRELERSYAANQRTLEAKTVQLAGLEKTARQLLNDISQKVMVYSTCS
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atgttggtcgtcagggaggatgatcagaactgggccacagtggagtctgccaaggacata
gcccagatgatgagtgcagcggtgatcatgttgtgtggggagggtacccaaagtagcacg
ccaatgctcaagaagactcccgggaaaagagccttggctttctacggcaacacctgtacc
ccagccatgactctgtcgctaaggccaagctgtgatgtcacgcccgagaagcctccagga
cctaccctcgggtggcgctcctttgcccagctgccggagtttggggatgtgtgcactgag
gggagctgctaccccgccaccggggaccttctgatcggccgtgcgcacaagctcaccgcc
tcctccacctgcggcattgagaagcctgagcgcttttgcatcgttggtcacttggaggag
gagaagaagtgttttgtgtgtgactccagggagaagtatgatgagaggatgaaccacacc
accagccacagcatcgaaaacttggtcaccacctttgcccccaaccgcctcaagacctgg
tggcagtctgagaatggtgtggagaatgtgaccattcaactgaacctggaagctgagttc
cacttcacacatctcatcatgacctttaagacgttccgtccggctaccatggtgatcgag
cgttccatggattttgggaagaagtggcaggtgtaccgttactatagctataactgtgag
tccgccttccctgggatatccgtgggacccatggtcaaagtggacgacatcatctgtgac
tctcgctactctgacatagagccgtccgcagagggagaggtgatattcagggtgctggac
ccagcgtttgagattgaagacccttacagtcccaggatacagaacatgctgaagatcact
aacctgcgtgtccagttcactaagctccacacactgggtgacaacctgctggactccaga
gacgaggtcacggagaaatactactacgccctcttcgacatggtcgtccgcggcaactgc
ttctgctacggacatgcctccaaatgcgcccctgtcgatgggatacacgtaggcacagag
ggcatggtccatggtcactgtatgtgtaaccacaacacagagggtctgaactgtgagcac
tgtaaggacttctacaacgacctgccctggaggcctgcagagggacgcaacaccaatgcc
tgcaagatgtgcgagtgtaactaccactccaggtcatgtcactttgacatggctgtgtat
ctgtctacggggaacgtgagtggaggagtatgtgatgagtgtcaacataacaccatgggg
cgtcagtgtgagcagtgcagacccttctactaccagcaccccgaaagacacctgagagac
cccaacatctgtgaaccgtgtagctgtgacccgacgggctccctgcagggtggtgtgtgt
gacggcaggacagacgtgtctgctggtctaatagcaggacagtgtcgctgtaagaccagt
gtggagggagagcgctgcgaccactgtagacagggacactacggcctgggacagggacca
aacggctgcctgcagtgtacctgtaatcccctgggcacactgcctggaggaagcccatgt
gacatggacacaggaaactgcttctgcaaacgccttgtcaccgccaggaactgtgaccgg
tgtctgccgcaacactggggcctgagtaatgacatggacggctgcagaccatgtgactgc
gaccagggcggagccgtcaacaatgattgttctccgatatcaggccagtgtcagtgtcga
gaacacatgtatgggaggcgttgtgaccaggtggagtcaggattctacttcatcgccctg
gaccactacacctatgaggctgaggacgccaagcacggccctggtgtgacggtggttccc
aggccctctcctccgaaccgtagtcctacctggacaggggcggggtttgtcaaggtacct
gagggagcccacttggagttccacatcaacaacctacctgactccatggactacgacatg
ctgatccgctatgaaccacagttgccggagcagtgggagcaggtggagatcagagtgata
cgtccgtactcaatgagagtggaacagccagccagtccatgtgaaaacacgctacaagga
ggagatcagcagttagtgtctcttcctccaggatccagacatgtgctgctcccgaggcct
gtgtgtctggagaaggggtggaactacacggtgcgtctcagtctgcctctctactcctct
ctcagtgacgtccaaagcccctacacgctcatcgactccttggtgttgattccgcgggtg
cgtgagctactgttgtttgagggttctcagggcgagggggcgtgggatacgttccagagg
taccgctgtctggagagcagccagagcgtcatcaagagccccatgacggacatctgcaac
aactacatcttcagtgtgtctgccctgctacaccagggggctatggcgtgccagtgtgac
tcccagggctctctcagtgcagtgtgcgaccccagcggcgggcagtgccagtgtcggccc
agcgtggcaggcaggaactgtgaccgctgtgcccccgccaccttcctgttcagcccctta
ggatgcagacgctgtgagtgtagtcctacgggctctgtgaacgctttctgccacgaggcc
acaggtcagtgtgagtgtattccaggtgcgtcagggcgtcagtgtgcccactgcttgcca
ggctactggggcttccctcaatgccagccctgtcagtgcaatggcaacagcgactactgc
caccctcagactggggagtgccagggctgccacgccttcaccaccgggcacatgtgtgaa
aggtgtctggatggttaccatggcgacccagtgttgggtttggggggtcactgccgcccc
tgcatgtgtcccgacgggccggggagcgggcgccagtacgcagacagctgctaccagacc
gccaacaactaccagctggtctgtgtctgcagccctggatacagaggagccaggtgtgac
gagtgtgccccaggtcactatggtaacccccaggtgcccagcggccgctgtctgccctgc
cagtgtaacgacaacatcgaccagctggacccggggtcctgcgacgctcgcacaggcgtc
tgcctcaaatgcctgcaccataccgagggctatggctgccagcgctgcaagctgggttac
tacggcaatgccgccagccagagctgcaggaagtgtatgtgttattcagtgggcacaacg
tcggagacgtgtccgtccccgggggagtgtcactgtgacctgcagactggccagtgtccc
tgccggactaacgtgattggccagaactgcgacagctgtgcccctgatacgttcaacatt
ggaagcggacagggctgccagacctgtgactgtgacccaacccactcttttgggacgtcg
tgcaacgagctgtcagggcagtgctcgtgcaggtcaggtttcgggggaagaaaatgcaac
gagtgccgagataagttctggggagaccctgaggtcaaatgtcaagcgtgtgactgtgac
ctgcgtggcatcgccagcgagcagtgccaccgttcgtccggccagtgtgtgtgtgtggag
ggtgtgtctggaccccggtgtaacgagtgtgccagagggtaccatgggacgttccccgcc
tgcgaacgatgccaccagtgctttgccgagtgggaccgcgtggtaggggaactgtccaat
cagactcagcgtttgaaggatcatgtgacagagctccagaccagtggggtgacggcgccg
tacaaagacaccgttagcagtctggagattagtgctaatgctatcagtgcgatagtagag
aacaaccctgctatacagaagatggaagatgtacaacagatgatgcagcaggccactgag
ctggtggcaggcctgaacgagaggctgaacgtctcagaggattccctgtcccgtctcgtt
gtcaatgccaacgacaccgaggccagtctggacgcactgagaaagcaggcccaagagcta
gaaagaacagtcacagacattcgagaccacataaagactgtgaagaactctaacatagag
ggagcgatggacaccatcaccaaggcccacttggagtctaagagggcggagatccgtgcc
aatcagtccaccagttaccctgacaacactttggaacagtcggctacactacggcgccaa
gcggaggccagactgagccagaaccaggcggagtttgacctgagacaacagaaacacaca
gagagactggagaggctcgccacagagctcaacactcttgacctatcagagctcagcaag
cagacatgtggagcggctgggggggaggaggggtgtgctgcgtccccctgtggaggggtg
gggtgtgtgtcggaggacggcacccttcgctgtggtggggaggggtgtgacggtttggtc
acacagacacaaagcactctgaaaacagccaaggacttcgaccaggaaatcctctccacc
gtgcaggaagtggacaagctctccaggatggtgtgggaggtgaatgtgcgtgcggacgag
gtcaagctgagtgctcaagaggtgctgctgaagtccaaccagagccgagatagagtggaa
gagagcaacgagcagctccgcagcctcatcaaggagatacgagacctactcactaacgac
cgtgccaaagtggaggttattgaagcggtgtcaaatgaggtgttggccctggagatgcct
acatcgtccgagcagctggaggccctgaccaaggagatcagagacagggtgggaaccctc
accagcgtggaggacatcctcagtcagagcgccaacgacatacacactgcagagaggctg
ctggagcaggctcgcaccgccagtcaggaggtgtctgagatgaaggagacagctgccctg
gtgaaggaagctctggaaacgactgagcctgctcagaatgctgccatcgatgccgtcaaa
caggcccacaacaacaccaggggaacacttgacctcatcacatctgtggagtcggagatg
gcggagtcggagctgcgtctgagtaacgccacactgcgtctgctgcagctggagagagac
gtgactctgctgagagagagcagcctgggcaccagccaccgcacacagcacactgagaga
ctgtctgagaccgccaggcaggacgcggagcaggccctgcaggagtttgacttggaggtg
aagggtaaatacagtgttgtggagggcttggtggtgacgaaggcagagggcgtgtctgac
gccaggaagagggcagagctactgcagcaggaggccaaggagctgctcacccagaccagt
gttaaactacagagactcagagagttggagaggtcgtatgcggccaaccagcgtactctg
gaggccaagacagttcagctggccgggctggagaaaacagcacgccagctgctcaatgac
atcagccagaaagtaatggtctacagcacctgttcttag
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