Salvelinus namaycush (lake trout): 120049221
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Entry
120049221 CDS
T07522
Name
(RefSeq) transcription factor SOX-6-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120049221
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120049221
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
UbiD
MoCoBD_1
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
120049221
NCBI-ProteinID:
XP_038851388
UniProt:
A0A8U0UG25
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Position
Sna1:76569537..76772382
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AA seq
767 aa
AA seq
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MSSKQATSPFASVADGEEAMSQDHLSWDKEESAEAHGTPQLPLHSLLHSKGSMDELQPLS
SVPPESDWDSMVSAQQRMESDSSKVCSLYSFRNNSTSPHKPEEGARERGDLLSGSAFGTP
ERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMETLLSKDWKEKMDRLDTSDLLGEVKGT
PESLVEKEYQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQIARQ
QQQLLQQQHKINILQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGISYKPG
DNYPVQFIPSTMAAATASGLSPLQLQQLYAAQLASMQVSPGAKMPPLPQPPNNSGPISPS
GLKNDKRSSSPITQVKEEGTQPLNLSARPKTAELVKSPTSPTHSLFTGSKTSPNSLSKSG
IPSPLGGMGRGSSLDILSSLNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEA
KLSALTGMGLNNCSRADKERAHFESLGHHLSKLGEDGKIGHRVIDLTRPEDLDGGASTAE
ARVYREARGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTN
QEKQPFYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQF
FTVGQQPQIPISTSAGVVYPGAITMATTTPSPHMTSECSSASASPEPAIPVIQSTYNMKI
EPSAMLTNDPIINGEVDEMDMYEDFDEEPKSDYSSETETLEPIVSAN
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccacctctccgtttgcctccgtcgccgatggggaggaagccatg
agtcaggaccacctgtcctgggataaggaggagagtgcggaggcccacgggacgccccag
ctgcccctgcacagcctgctccacagcaagggctccatggacgaactgcagcccctcagc
agtgtccctccagagagtgactgggacagcatggtgtcagcccagcagcgcatggaatct
gacagcagtaaagtatgttccctgtactccttccggaataactcaacctccccacacaag
cctgaggagggggcccgggagcgcggcgacctgctgagcggatctgcgttcggaacgccg
gaacgccgcaaaggaagcctggccgacgtggtggacacactgaagcagaagaaactggaa
gagatgacaaagacagagcaagatgaatccagttgcatggaaacacttctgtcaaaagac
tggaaagagaagatggacaggctcgacactagtgatcttctgggagaagtcaaaggtact
ccagagagcctggtagagaaggagtaccagctgagcaccatgatcactcagctgatcagc
ctgagagagcagctcctggccgctcacgatgagcagaagaagctggccgcctcacagatg
gagaaacagaggcagcaaatggagctggcccgccagcagcaggaacagattgccagacaa
cagcagcagcttctgcagcagcagcacaaaatcaatatcctccagcagcagattcaggtc
cagggtcacatgcctccgctcatgatccctatttttccacacgaccaacgaaccctggca
gcagccgccgcagcccagcagggctttctcttcccaccaggaatctcttacaagccaggt
gataactacccggtgcagttcattccatccacaatggcagctgcgacagcgtcaggactc
agccccctccagcttcagcaactgtatgccgcccagcttgccagcatgcaggtctctcct
ggagccaagatgccgccactcccccagcctcccaacaacagcgggcccatctccccctcc
ggcctgaagaacgacaagagatcctccagccctatcactcaagtcaaggaggagggaacg
cagcctctcaacctgtccgcccggcccaagacggcagagctggtcaagtcccccacgtcc
cccacacacagcctgttcacaggcagcaagaccagccccaacagcctgtccaagagcggc
atccccagtcccctcggaggcatgggccgtgggtcttctctggacatcctgtccagcctg
aactccacagcgctgttcggggaccaggacgcggtgatgaaggccatccaggaggccagg
aagatgagagaacagatccagagagagcagctgcagcaccaccagcagggcatggaggcc
aagctctctgccctcacaggcatgggcctcaacaactgcagcagggctgacaaggagcgg
gcacactttgagagccttggtcaccatcttagcaaactgggcgaggatggcaaaattggc
cacagagtcatcgacctcaccaggccagaggatctggatggaggcgccagcacagccgag
gcacgggtctacagggaagcccgggggaggaacagcaacgagccccacatcaagagaccc
atgaacgccttcatggtgtgggccaaagatgagcgccgcaagatcctccaagccttccca
gacatgcacaactccaacatcagcaagatcctgggctctcgctggaagtctatgaccaac
caggagaaacagccgttttatgaagagcaggcccgtctcagtaagatccacctggagaag
taccccaactacaagtacaagccccggcccaagaggacctgcatcatcgacgggaagaag
ctgcgcatcggcgagtacaagcagatgatgcgctcgcgacggcaagagatgaggcagttc
ttcactgtggggcaacaaccgcaaatccccatcagcaccagcgccggcgtggtctaccct
ggggccataaccatggcaacgaccacaccctcccctcacatgacgtcggagtgctccagc
gcctcagcaagcccggagccggccattcccgtcatccagagcacctacaacatgaagata
gagcccagtgccatgttaaccaacgaccccatcatcaacggagaggtagatgagatggac
atgtacgaggactttgacgaggagcccaaatcggactacagcagtgagactgagacactg
gagcccatcgtcagcgccaactga
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