Salvelinus namaycush (lake trout): 120049285
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Entry
120049285 CDS
T07522
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120049285
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120049285
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
120049285
NCBI-ProteinID:
XP_038851463
UniProt:
A0A8U0UG50
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Position
Sna6:22635402..22638360
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AA seq
289 aa
AA seq
DB search
MYNMMEHELKPSGQQQSHQTAMSPVTGNSHPGSKSLCPPGGDPMDKVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKDYPDYKYKPRR
KSKPLLKKDNQMGKYPLSAGNLLAAAQGQGGSPRMESYGWGPAGGYAGMQSEALGYTQQL
HRYDLSALQYPQAMTAAQTYMNGANTYSPMSYSSSHQQPNPVMSMVKPEPVSHSPTGGPN
HHRGPLQGDLRDMISMYIPGGDTNDPVSQRGGYSVQQHYLSGTVPLTHI
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaacacgagttgaagccctctgggcaacagcagtcgcaccaaacc
gccatgtctccggtcaccggcaactctcacccggggtccaaatccctctgtcctccgggc
ggggaccccatggacaaggtcaaaagacccatgaacgccttcatggtctggtctaggggc
cagcgccgcaagatggcccaggagaaccccaagatgcacaactctgagatcagcaagcgg
ctgggcgccgagtggaagctactgactgatgctgagaagcggccattcattgacgaagca
aagcgcctcagggcggtgcacatgaaggattaccccgattacaagtacaaaccacgccgt
aaatccaagcccctgctcaagaaggacaaccagatgggaaagtaccctctctctgccggg
aacctgctggccgccgcgcagggccaaggtgggagccccaggatggagagttacgggtgg
ggcccggcgggaggttacgccgggatgcagagcgaggccctgggctacactcagcagctg
caccgctacgacctgtccgcgctccagtacccccaggccatgaccgcagcacagacgtat
atgaacggtgccaacacttacagccctatgtcttacagcagcagccaccagcagcccaac
ccagtcatgtccatggtgaagccagagccagtgtcgcactccccaactggtggacctaac
caccaccgtgggcctctccagggggacctgagggatatgattagtatgtacatccccggg
ggggacaccaatgaccctgtctcccagagaggaggctacagcgtccagcaacactatctc
agtgggactgtgcctctcactcatatctag
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