Salvelinus namaycush (lake trout): 120049416
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Entry
120049416 CDS
T07522
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120049416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120049416
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
120049416
REST complex
120049416
Heterochromatin formation proteins
Other heterochromatin formation proteins
120049416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
SPCC191_01
Irc3_C
Motif
Other DBs
NCBI-GeneID:
120049416
NCBI-ProteinID:
XP_038851614
UniProt:
A0A8U0R148
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All DBs
Position
1:complement(77818431..77839901)
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AA seq
1299 aa
AA seq
DB search
MKRRAEDQEPVFASQQQRRPPVPGTVEGFQHRVIAPAVYEAVTDNMQPSPGIQYSIPQGY
QVPTMPQNSSGHGHASSPAALVGPHPHSPAVQSQGAAVVQSHAHPLAPMAPSQGAQFQRL
KVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMG
FNTFLPPGYKIEVQTNEQVNVTTPGQIHYITPHGISVQNLPVTGPPSQPVPHHHQALQPP
SGPPTSTATASTALPTQPTPAKTSKPMQSPALTPTSQPNPSIPSYASPRSPSVQSHAPVS
STPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGG
NYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVSCPPFLQLLSKTTADRAESV
RNDHGTTVKRPLMNNKQRLNQNGCPIRRHSGAGATPPVKKKPKMLGKDHAMAEASKHSIG
TESLFFEKVRKALRSSEAYDNFLRCLLIFNQEVISRAELVQLVLPFLGKFPELFSWFKNF
LGYRESSHIESFPKERTTEGMAMEIDYASCKRLGSSYRALPKSYTQPKCTGRTPLCKEVL
NDTWVSFPSWSEDSTFVSSKKTPYEEHIYRCEDERFELDVVLETNLATIRALEAVQRRLS
RMTAEEQVKFRLDNTMGGCSEVIHRKAIQRIYGDKAADIIDGLKRNPSVSVPIVLKRLKM
KEEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVFRSKTLLNEIETIYDERQ
EQASEDTATMPGGPHITLTYQDSQILEDAAALIIHHVKRQAGIQKEDKYKIKQVIHHFIP
DMLFARRGELSDVEEEEDEDEEEEEDETGPDEDGSKKHNGLAGSGGSTKSKLLFGNTGAQ
KLRGLDEVYNLYYVNNNWYIFQRLHQILCLRLLRIYGQAERQIEEDCREREWEREVLGVK
RDKSENPAVQLRLKEPMDIEVEDYYSAFLEMVRNLLDGNMEPTQYEDSLREMFTIHAYTA
FTMDKLIQSIVRQLQHIVSDELCVRVTDLYLSQSTNKATGGALSTQASRATAEGAYQRKA
EQLMSDENCFKLMFVKSQGSVTLTLELLDTEEENSDEPAETERWCDYVGRYLNSDSASPE
LREHLAQKPVFLPRNLRRIRKCQRGWEQLQQAKAATGTSEKSHSAEDLKMECMFKLNSYK
MVYVFKSEDYMYRRTALTRAHQSHQRVHTRLHRRFQGLVDTWAKEHVTSDMATDTRKWLM
GERREGLLPCTTTRDPQVLYYLKINRYHVTYHGSSSGAP
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgtgcggaggatcaggaaccagtatttgcgtcccagcaacagcgtcgcccc
ccagtcccgggtactgtggagggcttccagcaccgcgtcatagccccagccgtgtacgag
gccgtcaccgacaacatgcagccttcccccggcatccaatactccatcccccagggttac
caggttcccacaatgccccagaactccagtggccatggacatgcctctagtcccgctgca
cttgtcgggccccacccccacagtccagctgtccaatcacagggggctgcggtggtccag
agccatgcccatcctttggcccctatggccccctcacagggtgcccagttccagcgactt
aaggttgaagacgctctgtcctacctggaccaagtgaaactgcagtttgggaatcagcct
caagtctacaacgacttccttgacatcatgaaagagttcaagtcacagagcatcgacact
ccgggcgtgatcagccgcgtctcccagctcttcaagggccacccagacctcatcatggga
ttcaacaccttcctgccgccgggctacaagatcgaggtccagaccaacgagcaggtcaac
gtgaccacgccaggtcagatccactacatcaccccgcacggcatctcggtccagaacctc
cccgttacgggaccacccagccagccggtgccccatcatcaccaggccctgcagccgccc
agtggaccccccaccagcaccgccacagccagcaccgctctacccacccagcctacaccg
gccaagaccagcaagccgatgcagtctcctgccctgaccccgactagccaacccaacccg
tcaatcccatcctacgcctccccacggtccccctcagtccagtcccacgccccggtgagc
agcaccccttccagcgggcctcccctgcagaacaaccagcccgtggagttcaaccacgcc
atcaactacgtcaacaagatcaagaaccgcttccaggggcagcctgacatctacaaagcc
ttcttggagatcctgcacacttaccagaaggagcagcgaaacgcgaaggaggcggggggc
aactacaccccggcattgacagagcaggaggtgtacgctcaggtggcacggctcttcaag
aaccaggaggacttgctctcggagttcggccagttcttaccggacgccaacagttcagtg
agttgtcccccttttctccagctgctgagcaagaccacggccgaccgggcggagtcggtg
cgcaacgaccacggcaccacggtcaagaggcccctgatgaacaacaagcagcggctcaac
cagaacggctgtccaatccggaggcattctggagcgggcgccacgcctcccgtcaagaag
aaacccaaaatgttggggaaagaccatgccatggctgaggccagcaaacatagcatcggc
acagaatctctcttctttgaaaaggtgaggaaagccctccggagctctgaggcctatgac
aacttcctgcggtgtctgctcatctttaaccaggaagtgatttctcgtgcagagcttgtg
cagctagtgctaccgttcctgggaaaattcccagagctgttctcctggttcaaaaacttc
ctgggctacagagagtccagccacatcgagagctttcccaaggagaggaccacagagggc
atggccatggagattgactacgcttcctgtaagaggttgggctccagctacagggcgcta
cccaagagctacacacagcccaagtgtacagggaggaccccactgtgtaaagaggtcctg
aatgacacgtgggtgtcgttcccttcgtggtcagaggattccacctttgtcagctccaag
aagaccccgtatgaggagcatatttacagatgtgaggacgagcgcttcgagctggacgtg
gtgctggagaccaacctggccaccataagagctctggaggcggtacagaggaggctgtcg
cgcatgacggccgaggagcaggtcaagttccggctggacaacaccatgggtggctgctcc
gaggtcatccaccgcaaggccatccagaggatatacggcgacaaggccgccgacatcatc
gacgggctcaagaggaacccgtctgtgtccgtccctatagttctcaagaggttaaagatg
aaagaggaagaatggagggaagcccagagaggattcaacaagatctggagggagcagaat
gagaagtattacctcaagtccctcgaccaccaaggcatcaacttcaagcagaatgacacc
aaggtgttccgctcaaagaccttgctcaatgagattgagaccatatacgatgagcgacag
gaacaggcttccgaggacacggccaccatgcctggcgggccccacataaccctgacctac
caggacagccagatcctggaggacgccgccgcgctcatcatccaccacgtcaagaggcag
gccggcatccagaaggaggacaagtacaagatcaaacaggtcatccaccactttatccca
gacatgctgtttgcccggcgcggggagctgtcggatgtggaggaagaggaagatgaggat
gaagaggaggaagaagacgaaaccggaccagatgaagacgggtcaaagaagcacaacggg
ttggccggcagtggcggctccactaagtctaagctgcttttcggcaacacgggggcgcag
aaactgcgtggccttgacgaagtctacaacctctactacgtcaacaacaactggtacatc
ttccagcgcctgcatcagatcctctgtttgcggttgttgcgcatctacgggcaggcagag
aggcagatcgaggaggactgcagggaacgggagtgggagagggaggtgctgggtgtcaaa
cgggataagagtgagaatcctgccgtccagctgagactaaaggagcccatggacattgaa
gtggaggactactactctgccttcctggagatggtgcggaacctcctggacggtaacatg
gagcccacccagtacgaggactccctcagggagatgttcaccatccacgcctacactgcc
ttcaccatggacaagctcatccagagcattgtcagacagctccagcacattgtgagtgat
gagctctgcgtgcgtgtgacagacctctacctgagccagagcaccaacaaggccaccggc
ggcgccctgtccacccaggcctccagagcgaccgccgagggggcataccagcgcaaggcg
gagcagctcatgtccgacgagaactgcttcaagctgatgtttgtgaagagccaaggcagc
gtgaccctgaccctggagctgcttgacacggaggaggagaactcagatgaacccgctgag
acagagcggtggtgcgactacgtgggacgctacctgaactcggactcagcgtctccagag
ctgcgcgagcacctggcccaaaagcctgtgttcctccccagaaacctccggcggatacgg
aagtgccagagagggtgggagcagctgcagcaggcgaaggcggctacggggacgtcggag
aagtcccacagcgctgaggacctgaagatggagtgcatgttcaaactcaactcgtacaag
atggtgtacgtcttcaagtctgaggactacatgtacagacgcactgcgttgacccgggct
caccagtcccaccagagagtccacactcgcctgcaccgccgcttccaaggcttggtggac
acctgggccaaggaacacgtgaccagcgacatggccaccgacacccgcaagtggctgatg
ggagagcgtcgcgagggtctgttgccgtgcaccaccacccgggatccccaggtcctctat
tacctgaaaatcaacagataccatgtgacgtatcatggcagctcgtcaggggcaccttag
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