Salvelinus namaycush (lake trout): 120049435
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Entry
120049435 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase Topors-like
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120049435
03036 Chromosome and associated proteins [BR:
snh03036
]
120049435
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
snh03037
]
120049435
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120049435
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120049435
UBL E3 ligases
120049435
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
120049435
Cilium and associated proteins [BR:
snh03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120049435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-rbx1
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
zf-ANAPC11
Rad50_zn_hook
DUF7385
Motif
Other DBs
NCBI-GeneID:
120049435
NCBI-ProteinID:
XP_038851630
UniProt:
A0A8U0UG83
LinkDB
All DBs
Position
Sna6:57119..72826
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AA seq
547 aa
AA seq
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MAPTKMKLRVRRRESGGAGQEQEETSKASSQSVSAEASPDSKCPICLDRFNNMSYLDRCL
HRFCFRCIQEWSNNKVECPLCKQPFSSILHSIKAQDNFKEFTLRPPPVPGENGTAMIAAA
EAAAVALVTARVDGSHGERRRTRRRERRQSGRLWRGRGLSSAPPLPPLHPPLLPRPEDGG
MRGEMDGEDPGVIFDGLTGASAPPPHDRGVQRLMVRLAARRRSQREGRSVRLLRPREMLS
FRRALYRSGVRVRNARGGCERPRDITAAFYQRNPVALHRLLPWLQRELTVLYGAHGSLVN
IVQRIITSRIARHDMEGGGGAIQDELRPFLLARTDHFLHELISFARSPLSMEVYDQLSIY
DPPAPSYEDRMTSSSSDTDDSVIAISDEEEEEGGSEGERERRPVSVAGSNALSQSAWDDE
TPGPSYSTAEPSQSPMPLSISPGGRDSGPAGANQNPAQDMTAAGDGERVEEGGEEEEGEQ
CMIVGFVKAMAERTPELVQLSSDPSDEEGEKQEKSVQQTALTPLSLVISPLSIPVPPISL
FKNTSTE
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcccccactaagatgaaactgcgtgtccggcggagggagagcggaggagccggccag
gaacaggaagaaacctcgaaggcctcctctcagtcggtttcggccgaggcgtctcctgac
tctaaatgcccaatctgtctggaccgcttcaacaacatgtcttatctggacaggtgcctc
catcgcttctgcttccgatgcatacaggagtggagcaacaacaaggtggagtgccctctg
tgtaagcagccgttctcctccatccttcactcgatcaaggcccaggacaactttaaagag
ttcactctcagaccaccgcctgttcctggagagaacgggaccgcaatgatcgcagctgcc
gaagcagccgccgttgccttggtgaccgccagggtagatggtagtcacggagaacgaagg
aggacgaggagaagagagaggagacagtcaggacgactgtggagagggaggggcctctct
tctgctcctcctctcccccctcttcatcctcctcttctacccaggcctgaggatggaggg
atgagaggagagatggatggagaggacccgggggtcatctttgatgggctgacaggtgcg
tccgcccccccacctcacgatcgaggggtgcagcgtctcatggtgcgtctggctgctagg
cgacggtcccagagagaggggcgctccgtaagactgctccgaccacgggagatgctttct
ttccgccgggcgctctaccgcagtggcgtacgtgtcaggaacgcccgcgggggctgcgag
aggccccgtgacatcactgcggcgttttaccagcggaacccggtggcgctccatagactc
ctcccctggttacagcgggagctgacggtgctgtacggcgcccatggctcattggtcaac
atcgtccaacgcatcatcacctcgcgaatcgcacgtcacgacatggagggagggggtggg
gccatccaggacgaactccgtcccttcctgctggcgaggactgatcacttccttcacgag
cttatcagttttgcgcgttcccctctcagtatggaagtgtatgaccagctgtccatctac
gaccctccagcgccgtcctacgaggacaggatgacatcatcatctagcgacactgacgac
tctgtcatcgccatctcggatgaagaggaagaggaaggagggtcggagggagaacgagag
agacggccggtgtcggtagcaggaagtaacgctctgagccaatctgcttgggacgatgaa
acaccaggaccctcctactctacagctgagccgtcccaatcccccatgccgctgtcgatc
agcccaggggggcgggactctggcccagcgggggctaatcagaatcctgctcaggacatg
acagcggcaggagatggagagagggttgaggagggaggagaggaagaggagggggaacaa
tgtatgatagtagggtttgtaaaagccatggctgagagaactcctgaactggtccaactc
tcctctgacccctcagacgaagagggggagaaacaggagaagtctgttcaacaaacagcg
ttaacccctctctctctcgttatctctcccctctccattccagttccccccatctctctg
tttaaaaacaccagcacagag
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