Salvelinus namaycush (lake trout): 120049462
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Entry
120049462 CDS
T07522
Name
(RefSeq) protocadherin-7-like
KO
K16498
protocadherin delta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120049462
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120049462
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120049462
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120049462
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120049462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
KIAA1549
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
120049462
NCBI-ProteinID:
XP_038851655
UniProt:
A0A8U0QYL0
LinkDB
All DBs
Position
Sna6:5692228..5695414
Genome browser
AA seq
1026 aa
AA seq
DB search
MRTTGAVDYLCYGILILQLLNQPAAKQVLRYRLAEEGPADVRVGNVAVDLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
SGESSRRLGSSSGGRGADRRFDEGAGRSSVFELQVADTTDGEKQPQLIIKGALDREQRDS
YELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKAVYEADLPENSSPGAPILQLKAA
DADVGVNGQIEYVFGAATESVRRLLRLDESSGWLSVLHRIDREEVSQLRFTVMARDRGQP
PKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGVANVAEDVVVDTPIALVQVSDRDQG
ENGIVTCTVVGDVPFQLKPASEIEGEMNKKKYFLHTSAPLDYEATQEYNVVIVAVDSGSP
SLASNNSLIVKVGDFNDNPPIFSQNVVEVSFPENNAPGERVTTVLAIDADSGKNAEIAYS
LDSSVNGIFSINADNGDIRVNTILDREQTERYQFKVIAKDKGMPILQGSATVVVLVADKN
DNEPKFMQDVFTFYVKENLTPNSPVGMVTVIDADKGQNAEMSLFIEEEEEIFSIENDTGT
IFSTMSFDREQKTTYTFRVKAVDSGDPPRSATATVSLFVMDDNDNPPTVTFPINSSYTLL
PPSSNVRTVVRTVMATDTDTGINADLNYSIIGGNPFKLFEIDGGSGVISLVGKLEQKHYG
LHRLVVQVNDSGQPSQSTTTLVHVYVNETLSNSTIVEAQVAKSLGTPLNTNIAGDPNYDL
GKQRLSIVIGVVSGIMTVILIILIVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKGKK
PKKNKKNKQPLYSSIVTVEASKPNGQRYDGVNEKLSESPGMGRYRSVNGGPGSPDLARHY
KSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSSQTINKYN
KQRNAS
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggcgcagtggactatttatgctacggtatactcatcctgcagctgctg
aatcagcctgctgccaagcaagtgctccgatatcgcttggctgaggagggacccgcggat
gtcagggtagggaacgtagctgtggacctcggaatcgttgccgggtctggcgaggtgaca
tttaccctcgagtccggatctgattttttcaaaatagataatataacaggcgagctgacc
accaatgaacggcggatagaccgtgaaaaattacagcagtgccaaatgatatttgatgaa
aacgagtgtttcatagattttgaagtgtcagtaattggaccggcgcagagctgggttgac
ctgttcgaggggaaagtcattattttagatataaatgataacaccccgtctttcccatct
cccgtgctgaccctatcggtggaggagaacaggccgattggcactctctatctcctgccc
acggccaccgacagagatttcggtcggaacggaattgagagatatgagcttattcaagac
agcggggagagctccaggcgcctgggctcaagctcaggggggcgcggggcggacaggaga
ttcgacgagggggcaggcaggagcagcgtctttgaactgcaagttgctgacacaaccgac
ggggaaaagcagccgcagctcatcattaaaggggcactggacagggagcagagggactct
tatgagctcaccctgcgtgttagggatgggggtgaccccccacgctcctcccaggccatc
ctgagggtgatgatcactgatgtgaatgacaacagcccccgctttgagaaggctgtgtat
gaagctgacctgccggagaacagctcccctggtgcccccatcctgcagctgaaagcagct
gacgcggacgtcggggtgaacggtcagattgagtacgtatttggtgcggccacagagtca
gtgcgtaggctgctgaggctggacgagagctcggggtggctgagcgtgctccatcgtatt
gaccgcgaggaggtcagccagctgcgcttcacagtgatggcgagggaccgaggccagccg
cccaaaatggacaaggccaccgtggttcttaacatcaaggatgagaacgacaacgtgcca
gccattgagattcgtaagatcggacgcatcttcctgaaggatggagtggccaacgtggct
gaggatgtagtggtggacacgcctattgctttagtccaggtgtcagaccgagaccagggt
gagaacggcatcgtgacctgcactgtggtgggtgacgtgcccttccagctcaaaccggcc
agcgagatcgagggtgagatgaataagaagaaatacttcctccatacatcagcgccgctg
gattacgaggccacacaggagtacaacgtggtcatcgtggctgtggactcaggaagccct
agcctggccagtaataactcgctcatcgtaaaggtgggcgacttcaacgacaacccaccc
atctttagccagaacgtggtggaggtgtcctttccagaaaacaatgcccccggcgagagg
gtgaccactgtactggccatcgatgccgatagtggcaagaacgcagaaatcgcctactcc
ctcgattcctctgtgaatgggatattctccattaatgccgacaacggtgacatcagagta
aacaccattctggacagagaacaaacagagaggtaccagttcaaagtgatagccaaagat
aagggcatgcccatactccaggggtcagccactgtggtagtcctagtggctgataagaat
gacaatgagcctaaattcatgcaggacgtgttcaccttctatgtcaaagagaaccttaca
cccaacagccctgttggcatggtgaccgtcattgacgccgacaaaggccagaacgcagaa
atgagcctcttcattgaggaagaggaggagatcttctccattgagaacgacacaggaacc
attttctccaccatgtcgtttgaccgcgagcagaaaaccacctacacgttccgggtcaag
gctgtggacagtggagacccacccagatcagccactgccaccgtgtcactcttcgtgatg
gacgacaatgacaacccgccgaccgttaccttccccatcaatagctcatacaccctactg
cccccctccagcaatgttaggactgtagtacgaactgtcatggccaccgataccgacaca
gggatcaacgctgacctaaactacagtatcatcgggggcaaccctttcaaactgtttgaa
atcgacgggggcagcggggtcatctcacttgttgggaagctggagcagaaacactatggc
ctccacagactggtggtccaggtgaacgacagtggccagccctcgcagagcaccaccacc
ctggtgcacgtctatgtcaacgagaccctctccaactccaccatcgttgaggcccaggtg
gctaagagcctgggcactccgctcaataccaacatcgccggtgaccccaactacgacctg
ggcaagcagcggctgagcatcgtcatcggcgtggtgtcgggcatcatgacggtcatcctc
atcatcctcatcgtggtcatggctcgctactgccgccccaagaacaagaatggctacgag
gcgggcaagaaggaccacgaggacttcttcacccctcagcagcatgataagggcaagaag
cccaagaaaaacaagaagaacaaacagccgttgtacagcagcatcgtcaccgtcgaggcc
tccaagcccaacggccagcgctacgacggcgtcaatgagaagctgtccgagagccccggg
atgggccgttaccgctccgttaacggagggcccggaagcccggatttggcccggcactac
aagtccagctcgccactgcccacggtccagctccacccccagtcgcccacggccgggaaa
aagcatcaggctgttcaggacctgccccctgccaacaccttcgttggcaccggagataac
atttcccttggatctgaccactgctctgagtacagcagtcaaaccatcaacaagtacaac
aaacagcgtaatgcctcctga
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