Salvelinus namaycush (lake trout): 120049607
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Entry
120049607 CDS
T07522
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03020
RNA polymerase
snh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120049607
09124 Replication and repair
03420 Nucleotide excision repair
120049607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120049607
03400 DNA repair and recombination proteins [BR:
snh03400
]
120049607
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120049607
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120049607
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120049607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
120049607
NCBI-ProteinID:
XP_038851838
UniProt:
A0A8U0UGH7
LinkDB
All DBs
Position
Sna6:9814140..9835671
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKD
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS
PSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPQYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagcgagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacgtgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcaaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcacgacagtgaggacatcactaaggagaagggccac
ggtggctgtgggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgctgag
tggaagcacgtgaacgaggactcacaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccgccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgctgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgag
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccactcaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacttgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggcgtcccg
cgctccatcgcagccaacatgaccttcccagaaatcgtcacaccctttaacattgacagg
ttacaggagctggtgcgcagaggcaacagccagtatcccggagccaaatatatcatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctccag
attggctacaaggtggaaagacatatgtgcgacggtgacatcattatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccacaccgtacaatgctgactttgacggggacgagatg
aatctgcatctaccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcaccgcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaag
ccccggccgctctggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccacccagacgaggaggacagtgggccatacaaacacatc
tcccctggggacaccaaggtgatagtggagaatggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgcttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctctattggtattggtgattctattgctgacgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaagtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaacgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggctccaaaggctccaagattaacatc
tctcaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatccccttcggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggctggcctcacgcccactgagtttttttttcacgccatg
ggaggcagagaggggcttattgacacggctgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tctatcaaccaggtggtacagctgcgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgcgcgctgcggcgcaccctgcaggaggacgttgtgaaggac
gtgatgaccaatgcccaggtgcagagtgccctggagagagagtatgaaaagatgaaggat
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttcaggatcaacccccgcaccccc
acagacctcaaccccctacgagtggtagagggtgtccaggagctgagtaagaagctggtg
attgtgaacggcgaggaccacctgagcagacaggcccagcagaacgccaccctcctcttc
aacatccacctgcgctccacgctcagctcccgacgcatgacagatgaattccgactgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
catccgggtgagatggtgggggcgttagccgcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgctggtgtgtcggccaagaacgtcactctgggtgtg
ccgcgtctcaaggagttgatcaacatctctaagaggcccaagaccccctccctcaccgtg
tttctgctaggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgactgccaacacagccatctactatgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcctgac
tttgacgtgactcgcatctccccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatattcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagaccgacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggtctgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgat
attgtagagatcttcacggtgctgggtattgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcatggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgacccaatgaagggtgtgtctgagaacattatgctgggc
cagctggccccctgcgggacgggctgctttgacctgctgctggacgctgagaagtgcaaa
tacggcatggagatccccaccaacatccccggtatcagcgtggctggacccaccggaatg
ttctttggctcggcgcccagccccatgagtggcatgtccccagccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagcgggatgactccc
ggagcagcaggcttctctcccagcgcagcgtccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccagggccagccagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctccccggcctacgag
ccccgctctcctggaggatacaccccccaaagcccgggctactccccaacctccccctcg
tactccccaacctccccctcttactcccccaccagccccaactacagccctacctccccc
tcgtactccccaacctccccctcatactccccaacctccccctcgtactccccaacctcc
cctagttactcccccacgtccccctcctactccccaacctccccctcgtactctccaacc
tcccctagttactcccccacgtccccctcttacagccctacatccccaagctacagccct
acgtccccaagctactcccccacctcgcctagctactcccccacctcaccctcctactcc
cccacctcaccctcctactcccccacctcaccctcctactcccccacctcaccctcctac
tcccccacatctccctcttactcccccacctctccaagctacagcccctcttcacccaac
tacacccccacctccccctcctactcccccacctccccctcctactcccccacctcccca
aactacacccccaccagccccaactactccccgacctccccctcttattcccccacctcc
ccgtcctactctccctccagcccacgcttcaccccccagtcacccacctacacccccagt
tctccctcttatagccccagctcgccctcctactcacccacctcacccaaatacacccct
acgtctccctcttactcccccagctctccagagtacacccccacctcccccaaatactcc
cccacctcgcccaagtactctccgacctctcccaaatactcacccacctccccaacttac
tcaccgacgacgcccaagtacagccccacttcgcccacctactcgcccacctcgcccacc
tacacccccaccagcccccagtactcccctacctccccaacatactctccaacctcaccc
aaatactctcccacctcccccacctactcaccaactagccccaaagggtccacctacagc
cccctgtctcctggctacagcaacccctcgcccagcttcaccctcaccagcccggccatc
agcccagacgacagtgacgaggagaacaactga
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