Salvelinus namaycush (lake trout): 120049927
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Entry
120049927 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase Hakai-like
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120049927
04131 Membrane trafficking [BR:
snh04131
]
120049927
04121 Ubiquitin system [BR:
snh04121
]
120049927
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120049927
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
120049927
Membrane trafficking [BR:
snh04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
120049927
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120049927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_Hakai
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
P53_TAD
AraC_N
DZR
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
120049927
NCBI-ProteinID:
XP_038852363
UniProt:
A0A8U0UH11
LinkDB
All DBs
Position
Sna6:35840404..35844852
Genome browser
AA seq
486 aa
AA seq
DB search
MDQSDNDLQGTDGSGSLGGPDVRRRIPIKLISKPTIRSKPAPRTQRPMGRQPSKPQAGDE
ESFSFKQEERFDCGTKAGDVFASQRRFPQQMFWDFKLNLIGEKDDIPAHFCDKCGLPIRI
YGRMIPCKHVFCYECALLHEKKGDKMCPGMQLFSCTDPVQRIEQCLRGSLYMCSIVQGCK
RTYLSQRDLQAHINHRHMRAAKALASRQDALHLPPSTEVPDRFRVPPPHLPKTQGHLPPS
LQHGGHDPYGQPPPASHDAPPLSQETFRIATVTTRARSNLITVPIQDDSGSSSTSSSRDP
LPPGPGPAPPPHHHPDYPGQPVVSHPHHMMAPPQQHYGPPPPPPPPINHPMQHPPQGSGT
PHMVYNQAGPPPPMSNAPPPITPPPGHIMGQMPPYMNHPPPGPPPQHGGPPVNAPPPHHY
NPNPMQQFPEDQGTLSPPFNQQGGLSPGMWPAPRGPPPPRMQGPPPQGQMPGPHHPDQSR
YRPYYQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaagtgacaatgacctgcaaggcacggacggctcggggagtcttgggggccct
gatgtccgcagacgcatccccatcaaactcatctccaaaccaaccatcaggagcaaacct
gctccccggacacaaagacccatgggcaggcagccctccaaaccccaggctggggatgaa
gagagttttagcttcaagcaagaggagaggttcgactgtggtaccaaggctggggatgtg
tttgcaagtcaacggaggttcccccagcaaatgttttgggactttaagttgaatttgata
ggtgaaaaggatgacattccagcacacttttgtgacaagtgtggtctgcccataaggatc
tatggacgcatgattccatgcaaacatgtgttctgttatgagtgtgctttgctccacgag
aagaagggagacaagatgtgcccaggtatgcagctcttcagctgcacagacccggtccag
cgcatcgaacagtgtctgcggggctccctctacatgtgcagcatcgtgcaaggctgcaag
cgcacctacctttcccagcgtgacctgcaggcccacatcaaccaccgccacatgagggca
gccaaggccttggcaagccgccaggacgccctgcaccttcccccatccacagaggtgcct
gaccgtttccgtgtgcccccgcctcacctgcccaagacccaagggcatctcccgccctcc
ctccaacacgggggtcatgacccctacggtcagccaccaccggcttcccatgatgcacct
cctctttcccaggagaccttccgcatcgccacggtaactacacgagcacgcagcaacctc
atcaccgtgccaatccaggatgactccggttcttcctccacctcttcctcccgtgaccct
ctccctcctggcccgggccctgctccacccccacaccaccaccctgactaccctggtcag
cctgtagtgtcccacccccaccacatgatggcgccaccgcaacagcactatggccctccg
cctcctccccctccacccatcaaccaccccatgcagcacccaccccagggctctgggaca
ccccacatggtgtacaaccaggccggccctcccccgcctatgtccaacgcaccccctccc
attaccccccctccaggacacatcatgggtcagatgcccccctacatgaaccaccctcct
ccaggccccccacctcaacacggtggtcctccagtcaacgccccccctccccaccactac
aaccctaacccaatgcagcagttccctgaggaccagggcacacttagtcccccttttaac
cagcaagggggtctgagccctgggatgtggcctgcccctagagggcctcctcctccaagg
atgcagggccctccacctcagggccagatgcctggaccccatcaccccgatcagtcccgc
taccgcccttattatcagtaa
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integrated database retrieval system
