Salvelinus namaycush (lake trout): 120049987
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Entry
120049987 CDS
T07522
Name
(RefSeq) AT-rich interactive domain-containing protein 2-like isoform X1
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120049987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120049987
03021 Transcription machinery [BR:
snh03021
]
120049987
03036 Chromosome and associated proteins [BR:
snh03036
]
120049987
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
ARID
120049987
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120049987
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
120049987
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
120049987
NCBI-ProteinID:
XP_038852475
UniProt:
A0A8U0QZL0
LinkDB
All DBs
Position
6:39567472..39594249
Genome browser
AA seq
1659 aa
AA seq
DB search
MANSTGKNLLDQRRKGLAFLDELRQFHRSRGSPFKKIPVVGGKELDLNALYIRVISLGGF
AKVSDKNQWSELGEDFNFPRSCSNAAFVLKQYYLRYLEKYEKVHHFGEDDDEVQPGNPKP
SLPIGAIPCSYNYQQHTVSDYLRQSYGLSMEFTPPCDYNKLVLSLLSGLPNEVDFAINVC
TLLSNESKHAMQLEKDPKLITLLLAHAGVFDDSLGSFSFVFGMDWKEQTSRDFMKFWKDV
VEDSEVRDLIWDKTSLTQVTDTMSGDERWGALFHPPRNLGIGDIEGQRVLQVGVILRNLS
FEEANVKLLAANRTCLRFLLLCAHCHFISLRQLGLDTLGNVAAELQLDPVDFRTTHLMFH
TITKCLMSRDRFLKMRAMEILGNLSKAEDNSVLICEYVDQESYREVIGLLSLPDLMLLMS
SLEVLYLLAQLGEIPCSKIASVDRSIDLLVRLVSVDLHTFGPDALTAVRLMEHQAAGQSQ
VAEVRPQLVEQLPAPLQGAPIPAARVPVQSTPPPPGIVELDGEKFTVQWLNAHFEVSGES
SVSRSEMYSEYLTTCSKMGRAGILASQGFLKCLRTIFPNHTVKRLEDTKPNAQAHIHVVG
VKRRAIPLPIQLYYQQQASPTPGPRHDVPVDPQASPSVPSLTANPAAPQVASTMQDGVPL
PQSAQTVPRLPLHPQASPHQHPHSAQQAKSGDILKTAMVQSSIPTSGQVVQNHSPNMAQQ
LHHQQVMAPTGTPVTLFQQVQQGHIFTARVQGVPIAQRPPLPHNPSSSVPQALSQGPQQE
TAVFSAPPHYAAVSAPCSSLQNFQVGGGQVFTIAGVSNAQGSRVTFQNIAPKPAPSQASG
PPTSTHNQKQQSSVVIVSPNPQQNQAYAPAIHQIVLANPSTMSGGQAIQLAGQPPTPSNP
PPCPPIIAPLPQGLPSPSNTQIPMQGSASVSQMLSVKRQPQQLNPQQQFHPQQQFQIQAQ
PLPQQQPSPQPTSTESSLIKQLLLPKRPSTPGGKLILPAPQVPPPSSTQRSPSPQVLYQV
ASQGQPQPQQLNVQLVPSQLQSPGGPLQTVQLISTSSPATIIQGQAPGGQVTFTVVPNTG
FTTSASAAAAQISQGAAAPGLPAVQTGNTLHGPPPPFRGDKIICQKEEEAKDATGLHIHE
RKIEVMENSSLADGAGTKTSNGDLAGADAPGAKLLNGRKCMDSSLPPYHSGNSQGACVNG
PASESCPTNGKQPSGPANPQEGHVDPKKALVNGVCDFERGDASTGAHLSKNIPNHIASKH
LGNGEVGPPQKLHGAPQEPSVPQQDTAKAEQAERLANGPQATGPFPNGPMGTGPNYTLPA
FRQQLFPTVTVNSQGSTGPGTLPANGLSGESRALKRPAEEDKGASGIPCKVGVRIITISD
PNKAGCSATMVAVPAGADPSTVAKVAMGNATQQRNCSTIQATSSTLPPTVAQPVQAGSSS
PNTPLSGPQAMVAPPEQTRKAGQNFKCLWQSCKRWFETPSRVFYHAATQHGGKELYPGQC
LWEGCEPFPRQRLSFITHLQDKHCSRDALLAALKLEQETTQTQDSNQKTSKPQPVASSTP
APRAQKAIVNHPSAALMALRRGSRNLVFRDFTDEKEGPMTKHIRLTAALTLKNIAKYSDC
GRKLVKRHESHLSVLALSNMEVSTTLAKCLYELTRSLQA
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcgacggggaaaaatttactagatcagcgaaggaaaggactggctttcctg
gacgagctgcggcaatttcaccgaagcagaggatcgccgttcaagaagattcctgtcgtg
ggtgggaaagagctggatcttaatgctctctatatcagagtcatttcgttgggtggattt
gctaaggtttctgacaaaaatcagtggtctgagctgggtgaagattttaatttcccaagg
agttgttcaaacgcagcatttgttttaaaacagtactaccttcgatatttagaaaagtat
gaaaaagtccatcacttcggcgaggatgatgacgaggtgcagcctgggaacccgaaacca
tctcttccaattggtgcaatcccctgctcctacaactaccagcaacacactgtatcagac
tatctccgccaaagctatggactgtccatggagttcacgcccccatgcgactataacaaa
ctggtgctctctctcctgtcgggcttgcccaatgaagtggacttcgcaatcaatgtttgc
actctcctctccaacgagagcaagcatgccatgcagctggagaaagaccccaaactcatc
acgctgctgctggcacatgcaggtgtcttcgatgactcactaggcagcttctcctttgta
tttgggatggactggaaggagcaaacctcccgggacttcatgaagttctggaaggatgtg
gtagaggattctgaagtcagggacctcatctgggacaagaccagcctgacacaagtgaca
gacactatgtcgggggacgagcgctggggcgccctcttccatcctccacgcaacctaggc
atcggcgacatcgagggtcagcgggtcctgcaggtgggggtcatcctccgcaacctctcc
ttcgaggaggccaacgtcaaactgcttgctgctaaccgcacctgtctgcggttcctctta
ctgtgcgcccactgccacttcatctccctacggcagctggggttggatacactcggcaac
gtggccgcagagcttcagttagatcctgttgactttcgaacaacccacctaatgtttcac
accatcaccaaatgcttgatgtcaagggacaggttcctgaagatgagggccatggagatc
ctgggtaatctgagcaaggcggaggacaacagcgtgctgatctgtgagtacgtggaccag
gagtcgtaccgggaggtgatcggcctgctgtcgctgcctgacctcatgctcctcatgtcc
tccctggaggtcctctacctgctggcccagctgggggagatcccctgcagcaagatcgcc
tccgtagacaggagcatagatctgctggtgcggctggtgtcagtggacctgcacactttt
ggtccggatgctctgacggctgtgaggctgatggagcaccaggctgctgggcagagccag
gtggccgaggtgcggccgcagcttgtagaacagctgcctgctccgctgcagggcgcacct
atcccagcagcaagagtccctgtccagtccactcctccccctcctggtattgttgagcta
gatggggagaagtttacagtgcagtggctgaacgcccacttcgaggtgagcggcgagagt
tcagtgtcgcgctcagagatgtactcggagtacctcaccacctgcagcaagatgggacgc
gctggcatcttggcctcccaaggcttcctcaaatgtctacggaccatcttcccaaaccac
acagtgaagcggctggaggacaccaagcccaatgcgcaggcacacatacatgtggtgggg
gtcaaacggagggccatcccactgcccatccagctgtactaccagcagcaggctagcccc
acaccagggcccaggcacgacgtccctgtcgacccacaggcatccccgtcagtccccagc
cttactgctaacccggcagcgccacaggtggcctccaccatgcaggatggtgtacccctc
ccccaatcggctcagactgttcctcggctcccccttcacccccaggcctcaccacatcag
cacccccactcagctcagcaggccaagtcaggggatatcctcaagacggccatggtccag
agctccatccccacctctggccaggtggtccagaaccacagccccaacatggcccaacag
ctccaccatcaacaggtcatggcgcctaccgggacccccgtcacactgttccaacaggta
cagcagggccacatcttcacggcgcgggttcagggggtgcccatcgcccagcggccgccc
ctgccgcacaatccctcctcctcagtaccccaggccctctcccagggcccccagcaggag
acggctgtgttctctgcccccccgcactacgccgccgtgtctgccccctgctcctcgctg
caaaacttccaggtgggcgggggccaggtgttcaccatcgccggcgtgtccaacgcccag
ggttcccgcgtcactttccagaacatcgcccccaagcctgcaccctcgcaggccagcgga
ccgcccacatccactcataaccagaagcagcagtccagcgtggtcattgtcagccccaac
ccccagcagaaccaggcctatgccccggctatccatcagatcgttctggccaacccctcc
accatgtctggtggccaggccatccaactggcaggacagcctcccactccttccaacccc
ccaccctgccctccaattatcgctcctctgccccagggcctgccctctccttccaacacc
cagatcccaatgcagggctctgcttctgtcagtcagatgctgtcggtcaaacggcaacca
cagcaattgaacccccagcagcagtttcacccccagcagcagtttcagattcaggcccag
cccctgcctcagcagcagccgtccccccagcctacctccacagagtccagcctgatcaaa
cagttactgcttccaaagcggccctccacgccgggcggcaaactcatcctgcccgcgccc
caggtgcctccccctagtagcacgcagcgttcccccagcccacaggtgctctaccaggtg
gcctcacagggccagcctcagccccagcagctcaatgtacagctggtccccagccagctt
cagtccccaggggggcctctccagacggtgcagctcatctccaccagcagccccgccacc
atcatccagggtcaggctcctggtggccaggtcaccttcactgtggtgcccaatacaggc
ttcaccacttcagcctctgcagccgccgcccagatcagccaaggagccgctgcaccaggc
ctgccagcggtccagacaggcaacaccctccacgggccaccaccgcccttcaggggggac
aagataatctgccagaaggaggaggaggccaaggacgccacgggtctgcacatccacgaa
cgcaagatcgaggtgatggagaactcctctctagccgatggggctggcaccaaaaccagc
aacggagacctggcaggggctgatgctccaggggccaagctgcttaatgggaggaagtgc
atggactccagtctacctccataccactcagggaacagccagggggcctgtgtcaatgga
ccggccagcgagagctgccccaccaacgggaaacagccctctggcccggctaacccacag
gagggacacgtcgaccccaaaaaggctcttgtcaatggggtctgtgactttgagagaggg
gacgcctccaccggtgcccacttaagcaaaaacattccaaatcacatcgcttccaaacac
ttggggaacggggaggtgggtcctcctcagaaactgcatggggctccccaggagccctct
gtcccccagcaggatactgccaaagctgagcaggcagagcgccttgccaatgggcctcag
gcaacaggccccttccctaacggacctatggggacggggcctaactacactttgcctgct
ttcaggcagcagctgtttcccactgtcactgtaaactcccagggctccacggggccaggg
accctgccggccaatggtttgagtggcgagagccgtgcactcaagaggccggcagaggag
gacaagggggcgtctgggattccctgtaaggtgggagtgaggatcatcaccatcagcgac
cccaacaaggcgggctgcagtgccaccatggtggccgttcctgctggagccgacccaagc
acagtagccaaagtagcaatggggaatgccacgcagcagaggaactgctcgaccatacag
gcaaccagctctacgcttccgccaacagtggctcagcctgtgcaggctggcagctccagc
cccaacacccccctttctgggccacaagccatggtggcacccccagaacagaccaggaaa
gcgggacagaacttcaagtgtctgtggcagtcctgtaaacggtggtttgagacgccgtct
agggtgttctaccatgcagccacgcagcatggtggcaaggagctgtacccaggccagtgc
ctctgggagggatgtgaacctttcccccgacagagactgtccttcataacccatttacag
gataagcattgttctcgagatgccctattggccgcactaaaactggagcaggaaacgaca
cagacgcaggactccaatcagaaaacttccaagcctcagccagtggcaagcagcactcca
gcaccgcgagcacagaaagctattgtcaatcatccgagcgcagcccttatggcactacgc
agaggctctcggaacctggtgttcagggacttcactgatgaaaaagagggaccaatgacc
aaacacatacgactaactgctgccttaacgctaaagaacatcgccaagtattcagactgc
ggtcgaaagttggtgaagaggcatgagagtcacctctctgtgctggcactcagtaacatg
gaggtctccacaacgctcgccaaatgcctttatgaactgactcgctctctccaagcttga
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integrated database retrieval system
