Salvelinus namaycush (lake trout): 120050117
Help
Entry
120050117 CDS
T07522
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease-like
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120050117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snh03400
]
120050117
Enzymes [BR:
snh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
120050117
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
120050117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
120050117
NCBI-ProteinID:
XP_038852693
UniProt:
A0A8U0UHC5
LinkDB
All DBs
Position
Sna6:48008923..48012000
Genome browser
AA seq
312 aa
AA seq
DB search
MSKRSKKNEQEAGDGDHDNGTASAAKKGKKVKEPEAPILYSDPPDKMNSKDGRAANMKIT
SWNVDGLRAWVKKKGLDWVRDEAPDVLCLQETKCAEKSLPDEITSMPEFPHKYWAGSDEK
EGYSGVAMLCKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNSGRGLVRLDYR
KTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLA
AGFTDSFRELYPEQANAYTFWTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAMG
SDHCPITLHMVV
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagatcgaagaaaaatgagcaggaggctggagatggtgaccatgacaacggc
acagcttccgctgccaagaaaggaaagaaggtcaaggaaccagaggcccccattctgtac
agtgaccctcctgataagatgaacagcaaagatggtcgtgctgctaacatgaagatcacc
tcctggaatgtggatgggctcagagcttgggtcaagaagaagggccttgattgggtgcgt
gacgaggccccggatgtgctgtgcctacaggagacgaagtgcgctgagaagtcccttcct
gatgaaataacctccatgcccgagttcccccacaagtactgggctggctccgatgagaag
gagggctatagcggggtagctatgctgtgcaagactgagcccctcaaagttacctatggc
attggtaaagaggagcatgataaggagggccgtgttatcactgctgagttccccaccttc
ttcctggtcaccgcctacgtgcccaactctggccgaggcctggtgcgcctggactatcgc
aagacctgggatgtggagttcaaggcctacctgagcgacctggacaagcgcaagcccctg
gtgctgtgtggggatctgaacgtggcccatgaggagatcgacctgaagaactccaaaggc
aacaaaaaaaacgcaggcttcacagcagaggagcgtgagggcttcaatcagctgctggct
gcaggcttcaccgacagcttccgcgagctgtaccccgagcaggccaacgcgtacaccttc
tggacctacatgatgaactctcggtctaagaacgtaggctggcgtctggactactttgtg
ttgtcctctgctctactgccaggcctttgtgatagcaagatccgcaaccaagctatgggc
agtgaccactgccccatcactctacacatggttgtgtag
DBGET
integrated database retrieval system
