Salvelinus namaycush (lake trout): 120050268
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Entry
120050268 CDS
T07522
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
snh04990
]
120050268 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
snh04990
]
Other domain-containing proteins
Patched domain-containing proteins
120050268 (ptchd1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
120050268
NCBI-ProteinID:
XP_038852774
UniProt:
A0A8U0UGG4
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Position
Sna7:322609..415380
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AA seq
905 aa
AA seq
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MLRQVLQAGLRSSFQALGRFVASHPVFFASAPVLVSVLLGASFSRYRVEGNVESLLVPKH
SLAKIEGNLVDSLFPVNRSKHTLYSDLQTPGRYGRVIVTSRRGSILDPLHTDLVLKLHRA
VVQLQVPVLGFNYSFSHLCLLDDKNTCIIDDIIRSLEDSQSARFANRSSLPLRYPITRLA
DGRMAYIGHQLGGVQAWGAGPAVQGPGGVSGRGQGVRSARALQLTYYLQARGALTDRVAS
QWEQAFCGELGRFGAGHPELSLYPFTSSSLRTDFQASSVLARRPLLASVCVCLVLAVGCC
SMRDCVRAKPWLGLLALLSIALSGLTAAGILNLTGTTYNSTYLGVPFILLGHGLFGTFEM
LSSWRRTREDQHVKERVASVFSDVMLRYSGATLLHQVSLGLAASPLTNLEAVRLFCRCAA
LGVTVGYLYTLSFYATCLVATGYLETGYRHGCFCRRVPKKGALDTKPRWYRCLMYTRYQD
ETHSQTHSHTQDSHLLLGCVQRCYGDWITNTYVKPFMVLLYLVYISFGLMGFLQVSQGSE
PSSLVALDTGTSLYARAQQRYFSSYTPVIGFYVYESAPYWNTSVQRDLLEYAEGFQRISW
LESYLDYLRERNLTTTSQSRDSFTRMLRLSFLRQPQFAHFADDIIFAERDEGEEPEMAAS
RVFLVAKTTENKREEMSVLLDTLRRLSLTSRVRFLIFNPSFVYLDRYATAVSSPLRHSLM
AVLFLLGLSSLAVVEPLVAVWLSLTLLSVQFGVLGFMTLWGVELDCVSVLCLISALGHSA
DCCGPLLATFSSGRGDSRTVWVRLALERHGVPSLQTLICYTAALLPLAAVHSNLTRSLFR
CLVLTAFCSALHALAFLPTLLTFLPPAKKTGSRQGDRGEGEGLREEVECVEMVDSTRVVD
QITTV
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccaggtgttgcaggcaggcctgaggagctctttccaggctctgggtcggttc
gtggcgagccacccagtcttcttcgcctccgcccccgtactggtgtctgtcctgctgggg
gccagcttcagtcggtacagagtggaaggtaacgtggagtccctcctggttcctaaacac
agtctggcgaagatagaaggaaacctggtggactcactgtttcctgtcaacagatctaaa
cacaccctgtactctgacctgcagactccaggtcgttacggtcgtgttatagtcacctct
aggagaggcagcatcctggaccccctacacacagacctggtactcaagctccatcgtgct
gtcgttcagctccaggttccagtgttggggttcaactactctttctcccacctctgtctt
ctcgacgacaagaatacctgcatcatcgatgacatcatccgatccctggaggacagccaa
tcagctcgcttcgctaaccgttcttcccttcctctgcgctacccaatcacacgtctggct
gacgggcggatggcctacattggtcaccagttaggaggggtgcaggcgtggggggcgggg
cctgcagtacagggcccagggggtgtgtctggtcgaggccaaggagtccggagcgctagg
gctctgcagctgacctactacctgcaggctcgcggcgccctgacggacagggtggctagc
caatgggagcaggcgttctgtggagagctgggccggtttggggcgggacaccctgaactg
agcttataccccttcacttcatcctctctaaggacagacttccaggcgtcgtcagtgctg
gctcggcgccccctgctggccagtgtatgtgtgtgtttggtgttagccgtgggctgttgt
tcgatgagggactgtgtgagagctaaaccctggctagggcttttggctctgctgtctatc
gccctctctggtctcactgctgctggcatccttaacctgactggaaccacttacaactca
acctacctgggggtaccattcatactgctgggtcacggactgtttggcacattcgagatg
ctatcgtcatggagaaggacacgtgaggaccaacatgttaaggagcgtgtagctagcgtg
ttctctgatgtcatgctgcgttactcaggagctacactgctacatcaggtgtctctgggt
ctggctgcgtctcctctgaccaacctggaggctgtccggctgttctgtcgctgcgctgca
ttgggcgtaaccgttggttacctttacaccttgtccttctacgccacctgtctggttgcc
acaggttacctggagacagggtacagacacgggtgtttctgccgccgtgtccccaagaag
ggagcgctggacaccaagccacgctggtaccgctgtctcatgtacacacgctaccaggat
gagacacactcacaaactcactcacacacccaggactcacacttgttgctaggctgcgtg
cagcgttgctatggagactggatcaccaacacctatgtgaagcccttcatggttctgctc
tacctcgtatacatctcctttggcctgatgggcttcctacaggtgagccagggctcggag
cccagttctctggttgctctggatacagggacgtccttgtatgctcgcgcccagcagcgc
tacttctcctcctacactcctgtgattggcttctatgtctatgagagcgccccctattgg
aacacctcggtacagcgagacctgctggagtacgctgaagggttccagcgaatcagctgg
ctggaaagctacctggattacctgagagaacggaacctcaccactaccagccaatcacgt
gatagctttacgcggatgctccgcctctccttccttcgccagccgcaattcgctcatttt
gccgatgacatcatcttcgctgagcgcgatgaaggggaggagccagagatggcagcatca
cgtgtcttcctggttgccaagacaacagagaacaagagggaggagatgtccgtcctattg
gacacactgagacgtctgtctctgacatcacgcgtccgctttctcatcttcaacccctcc
ttcgtctacttggacaggtatgctacagcggtgagctctcctctgcgccactccctgatg
gcggtgttgttcctgctgggtctgtcgtctctagcggtggtggagcccctagtggcagtg
tggctcagtctcaccctcctctctgtccagtttggtgttctgggcttcatgactctgtgg
ggcgtggagctcgactgcgtgtctgtgttatgtctgatttcagcactgggtcactctgca
gactgctgtggtcctctactggccaccttctcctctggccggggggacagccggaccgtg
tgggtcagactggcgttggagagacatggcgtcccctctctacagacgttgatctgctac
accgcagcgctgctccctctggccgccgtacactccaaccttacacgctcgctgttccgt
tgcctagtgctgacggcgttctgttcagcgctacatgccttggccttcctgcccacgctg
ctcaccttcctgccacccgccaagaagacaggaagtagacagggagacaggggggaaggg
gaggggcttagagaggaagtggagtgtgtggagatggttgacagcaccagggtggtcgat
cagatcaccaccgtctga
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