Salvelinus namaycush (lake trout): 120050405
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Entry
120050405 CDS
T07522
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
120050405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120050405
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120050405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
120050405
NCBI-ProteinID:
XP_038852921
UniProt:
A0A8U0R2D6
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All DBs
Position
Sna7:complement(25654538..25656872)
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AA seq
393 aa
AA seq
DB search
MSSPDAGYASDDQNQARCAISVMMPGMGHCQWADPLSPLGDTKEKSESSSGNQNRGKNEP
RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVLEKRPFVEEAERLRV
QHMQDHPNYKYRPRRRKQAKRIKRLDSGFLVHSMSDQQSTSLGGDGRVCMESMGYHHEHG
YQVSPQSLSHYREAQALGGASYESYCLPTPDTSPLDAVETDSMFFHSHSQEECHMMPVYA
YHSQGAEYPPQEPRSNHHANPMLHRHHSSPTEQQQASQAGPMPPTFNQLAMYYSQHCSPS
HPKRHPGHGAGQLSPPPDSHPHPADQVEQMHPSELIGEVDRSEFEQYLSSSRPGDMTGLS
YGVHEANMQGPESLISSVLSDASTVYYCNYNNS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagtgacgatcagaaccaggctaggtgcgcgatc
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctctcggg
gacaccaaagagaagagcgagtccagctccgggaaccagaaccgtgggaagaatgagccg
aggatccggagacccatgaatgcgttcatggtgtgggcgaaggatgagcgcaagcggctg
gcacaacaaaatccagacctgcacaatgcggagttgagcaaaatgttggggaagtcgtgg
aaagcccttcctgtgttagagaagcggccgtttgtagaggaggctgagaggcttcgggtg
cagcacatgcaggaccaccccaactacaagtaccgaccccggaggaggaagcaggcgaag
aggattaagcgcctggactccgggttcctggtccacagcatgtccgaccagcagagcacc
tccctgggtggggacggtagggtgtgtatggagagcatgggttaccaccatgagcacggc
taccaagtgtctcctcaatccctcagccactaccgcgaagcccaggccctcggaggggct
tcctacgaatcctactgcctgcccacccccgacacgtccccgctggatgccgtggagaca
gactccatgttcttccacagccactctcaggaggagtgccacatgatgcccgtgtatgcc
taccactcccagggggcagagtacccacctcaggagcctcgctccaaccaccacgccaac
cccatgctccacagacaccactcctcccccacagagcagcagcaagcctcccaggctggc
cccatgccccccaccttcaaccaactggccatgtactacagccagcactgcagccccagt
caccccaagcgacacccaggccatggggcaggacagctctcccctcccccagactcccat
ccccacccagcagaccaggtggagcagatgcacccctcagagctgataggggaggtggac
cgcagtgagtttgagcagtacctgagctcctccagacctggagacatgacaggcctgtct
tatggggtgcatgaggccaacatgcagggacctgagagcctgatatcctctgtgctctct
gatgccagcacagtgtactactgtaactacaacaactcctaa
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