Salvelinus namaycush (lake trout): 120050486
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Entry
120050486 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120050486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120050486
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120050486
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120050486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
zf-C3HC4_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120050486
NCBI-ProteinID:
XP_038852999
UniProt:
A0A8U0UGN7
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All DBs
Position
Sna7:complement(46749795..46780478)
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AA seq
685 aa
AA seq
DB search
MEALESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCASNEPVQSIGAFQCPTCR
YVISLSPQRGLEGLKRNVTLQNIIDRVQRAASSGPLALLPHSGPNSPSEDAGRFALALVP
ASTAMTSPGTPPSHVQCQFCEQDPPQDAVKTCVTCEVSYCDECLRATHPNKKPFTGHRLI
EPMSDCHLRGLQCLEHEEEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALSDRYEKLKQA
LDSNLSHLVKRNNELEGLMGKLIQTCQHVEVNASRQEGKLMEECDLLIDIIQQRRQIIGT
KIKEGKAVRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSITERVSMA
TASSQVLIPEINLTDTFDTFALDFTKEKKLLESLDYLTAPSPPGIREELCTASYDTITVH
WTSDDEFTVLSYELQYAIFTGQANIVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFI
VKAINQAGARSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETASKKGHGQERF
TSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRCNN
SWVVRHNSKELAIEPSPHLRRVGVLLDYDAGSLTFYDAVGSQNLHTFHVSFAQPVCPVFN
VWNKCLTVLTGLPIPEHLEGLETQD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgctggagtcagagctgacttgcccaatctgcctcgagctctttgaggacccg
ctgctcctgccctgcgcccacagcctgtgcttcggctgcgcccatcgcatactgatatcc
cactgcgcctccaacgagcccgtccagtccatcggagcattccagtgccccacctgccgc
tatgtcatctctctcagtccgcagcgtggcctagaaggactgaaacgcaacgtcaccctc
cagaacatcatcgaccgcgtccagagggccgcctcctccggccccctggccctgttgccc
cacagcgggcccaactcccctagcgaggacgccgggcgatttgccctggccttggtccct
gcctccaccgccatgaccagccccgggacgccgcccagccacgtgcagtgccagttctgc
gagcaggacccgccgcaggatgccgtcaagacgtgcgtgacgtgcgaggtgtcatactgc
gacgagtgcctgcgcgccacgcaccccaacaagaagcccttcacgggccaccgtctgatc
gagcccatgtcggactgccacctgcgggggctgcagtgcctggagcacgaggaggagaaa
gtgaacatgtattgcgtcaccgatgaacagctcatctgctctctgtgcaaactggtggga
agacaccgagaccaccaggtggcggccttgagcgaccgctacgagaaactcaagcaagcg
ttggattccaacctgagtcatttggtcaagaggaacaatgagttggaggggttgatggga
aagttgatccaaacctgtcaacatgtagaggtcaatgcatcacggcaggagggaaagctg
atggaagaatgcgacctcctgattgatatcatccagcaaaggagacagatcattgggacc
aaaatcaaggagggaaaggcggtccggatcaggaagctagcccagcagatctccaactgt
aagcagtgcatcgagaggtcctctgctctcatcacccaggccgaccagaccctgaaggag
acggaccacgcccgcttcctccagaccgcgaagagtatcaccgaaagggtttccatggcg
accgcctcctctcaggtcctgattccagagatcaacctgacggacacgtttgacacgttc
gctctggacttcaccaaggagaagaagctgctggagagcctggactacctcacagcgcca
agtcctccgggcatcagagaagagctctgcactgcatcgtacgacaccatcaccgtccac
tggacctcagacgacgagttcacagtgctttcctatgagctccagtatgctatcttcaca
gggcaagccaacattgtcagcctgtgtaactctgcagacagctggatgattgtgcctaac
atcaagcagaaccactacaccgtccacggcctgcagagcggcaccaagtacatcttcatc
gtcaaagccatcaaccaggcaggagcccgcagcagtgagccagggacactcaaaaccaac
agccaacctttcaagctggaccccaagtccgcccacaagaagctgaaggtctcccatgac
aacctgacggtggagcgcgacgagacggcatcgaagaagggacacggccaggagcgcttc
accagccagagtagctacggcgtcgtcggcaatgtttacatcgacagcggacgccactac
tgggaggccctgattggaggaagcacatggtatgcggtgggcatcgcctacaagtcggcc
cccaagcacgagtggatcggcaagaactcggcctcctgggtcctgtgccgctgcaacaac
tcgtgggtggtgcgtcacaacagcaaggagctggccatcgagccttcgccccacctgcgc
cgcgtgggtgtcctgctggactacgacgccggctcgcttaccttctacgacgccgtgggc
tcgcagaacctgcacacgttccacgtgtccttcgcccagcccgtgtgtcccgtcttcaat
gtgtggaacaagtgtctgactgtcctcacaggtctgcccatccccgaacacctagaaggg
ttggaaacccaggactga
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