KEGG   Salvelinus namaycush (lake trout): 120051022
Entry
120051022         CDS       T07522                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    120051022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:snh03400]
    120051022
DNA repair and recombination proteins [BR:snh03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     120051022
SSDB
Motif
Pfam: DUF3337 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_EIPR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD_LRWD1 WD40_RFWD3 WDR54 Beta-prop_Vps41 RAWUL Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 120051022
NCBI-ProteinID: XP_038853533
UniProt: A0A8U0UI61
LinkDB
Position
Sna7:complement(15777323..15787631)
AA seq 683 aa
MATLHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKSECVLLQVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGT
IRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDLRVLICEE
KAPVLKMELDRSADPPTALWVSTTKSTVNKWSLKGIHNFRASGDYDNDCTAPLTPLCTQP
EQVVTGGASIIQCHILNDKRHILTKDTNNNIAYWDVLKACKGEDLGKMEFDEEIKKRFKM
VYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEY
WPRTHINPMDEETEMNHMNGEHESRIQKGNGYFHVPPHTPVIFGEAGGRTLFRLLCRDSG
GETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVR
KVMEHVYEKIINLDNESQTGASGNNDKPSEQKEEEDVAVLAEEKIELLCQDQVLDPNMDL
RTVKHFIWKSGGDLTLHYRQKST
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggcgactcttcacaggcaaaatgctgctgggcggagaaaagtccaggtatcctatgtg
attagggatgaggtggagaagtataaccgcaatggggtgaacgctctgcagctcgacccg
gccttgaaccgcctcttcacggctggccgagactccattattaggatatggagcgtcaac
cagcacaagcaggacccgtacattgcgtctatggaacaccacacagattgggtcaatgac
atcgtcctctgttgcaatgggaagacattgatatctgcttcctcagacaccacagtgaaa
gtctggaatgcgcataagggattctgcatgtccacattgcgaacacataaggactatgtc
aaagccttagcctatgctaaggacaaggaactggtggcctcagcagggctggacagacag
atctttctatgggacgtcaacacactaacggcactgaccgcctccaataatactgtcacc
acctcctcactgagtgggaacaaagactccatctacagtctggctatgaatcagatgggc
accgtcattgtgtcagggtccactgaaaagagtgaatgtgtcctgctacaggtgctgaga
gtttgggatcctcgaacctgtgccaagctgatgaagttgaaaggccacacagacaacgtt
aaatcattactgctaaacagggatggcactcagtgtctctcgggcagctcagacgggacc
atccgtctgtggtcgctggggcagcagcggtgcatcgctacctaccgggtgcacgatgag
ggcgtgtgggccctgcaggtcaacgaagccttcacgcatgtctactccggcggacgcgac
cgcaagatctactgcaccgacctgagaaatccagacctccgcgttctcatctgcgaggag
aaagccccagtcctcaagatggagctggaccgctcggcagacccccccacggccctctgg
gtctccaccaccaagtccaccgtcaacaaatggtctctgaagggcattcataatttccga
gcatctggcgattacgacaacgactgcactgctcccctgacgcctctctgtactcaaccc
gagcaggtcgttacagggggagccagcattatccagtgccacattctgaacgacaagaga
cacatactaaccaaagacacaaacaacaacattgcatactgggatgttttaaaggcgtgt
aaaggggaagacctgggaaagatggagtttgacgaagagattaaaaagaggttcaaaatg
gtctatgtgccaaactggttctcagtggatcttaaaactgggatgttgaccatcacgctg
gatgagagcgattgctttgctgcatgggtgtcagccaaggatgcaggcttctccagtcct
gatgggtctgaccccaagttgaacctgggtggactgctgctgcaggccttactggagtat
tggccccgaacccacatcaaccccatggatgaagagacagagatgaaccacatgaacggg
gagcatgagagcaggatacagaaaggtaacggctacttccatgttccccctcacacgcca
gtcatctttggagaggcagggggaaggaccttgttcaggttgttgtgtcgagactccggt
ggtgagactgagtccatgttgctcaacgagaccgtgccacagtgggtcatcgacatcacc
gtggataaaaacatgcccaaattcaacaaaatccccttctacctccagcctcattcttct
tctggtgcaaaaaccttaaagaaggaccgcctgtcggccagcgacatgctccaggtgagg
aaggtgatggagcacgtatacgagaagatcatcaacctggacaacgagtctcagacgggg
gcctcggggaacaacgacaagcccagcgagcagaaggaggaggaggacgtggccgtgctg
gccgaggagaagattgagctgctctgtcaggaccaggtattggatcccaacatggacctg
cggaccgtcaagcattttatctggaagagcggtggagacctaacccttcactaccggcag
aagtccacgtga

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