Salvelinus namaycush (lake trout): 120051458
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Entry
120051458 CDS
T07522
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
120051458
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120051458
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
120051458
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GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans_2
Ion_trans
Lig_chan
Motif
Other DBs
NCBI-GeneID:
120051458
NCBI-ProteinID:
XP_038854255
UniProt:
A0A8U0UIL7
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Position
Sna1:complement(34417069..34432356)
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AA seq
1130 aa
AA seq
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MVTASIYTYTTPPTFAPHIHWHIPMAMKIPHTYTPISHTHCLYRGHRLWWAFLLSSLSVF
LGGLLALLLWKVAHRGFNSIGIFRPRRQRWAHRQSISVQTDFNLRNALKEWAFSVISAQH
LPGKVLMVLIFCFNIGSILTYIILSTDPVESCMKEYSIAFLIDLSFNICHLLYFGLRFLA
AQDKLTVWVDLRSLVDFFTITPSLVTLFSHRAWLGLRFIRALHILELPVVLQILNVFNSN
STTLKLSRLVAILTGTLLTSAGFIHLLENSGDPWLDFSNPQPLHYFECVYFLVVTMSTVG
YGDVELRTTLGRLFVIIFIFIGLGLFANFVPEVVQIIINRKRFDGSFTGVSGKTHVVVCG
HITLSSASAFMKDFLHEDRGEVDVKVLFLGNFRPNQELEAFFLRWFLKVTFYQGSVMQRR
DLERVKMHKAGACLIICDRFTSDQHKEDAANLMRVISIKQYCPNTRIIVQMLKHNSKAFL
QNVPNWDWSRGDAVICLAELKLGFMSQSCLVPGLSTLLTNLFTMQSEIEQDGDTWQNLYR
EGLYNEIYTEHLSPSFIGMSFAQASKSVCQSATERHISVLLLQTNMISLCLPACLPVCLS
ACVPVCLSVCQAMFPEAEQCVLVNPPSHIKIKLWTLGFLIASNASDARRASMYCSVCHRD
IKDLPRMRPCRCTEQKDVSSNTSAMSLGFRRPSLGVLPFSPEGETLRERECVWEQQQQQE
EQQEVGLDSTGLFHWCPPVPLKDISLTRQSASTLALQDHVVVCVFGDGGSSLLGLGDFMM
PLRASSLTAPELRTVVFLGDPHYFSREWANIQYFPNIYFLPGSPLCGADLRALRVERCAM
VVVLSSLSSSSDIEPSMQDKETIHFCVNLYHIRFSPEPGPRCTLSHTQSHGHGQGLELGH
GFGGHNRGPSHDTLDFSHVPTIPEKAEVTPAHSAGTTVPLLVELVNSSNVCFVNEADSQE
DSSSLTLSQAFSVGSVFSVDLLDSLMAATYFNANVPGLICTLVTGGDTPLLEAQLAEDNQ
LRGGEMSMKMWALRQRSKLAQLALQDEPLCSLACEDFKELFCQALDSLEILCFGLYRLLD
PPNPSMKRFVITNPSAELPLLSSDRVFCSVPFHQSHLLTLRRAKTISHRL
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgcctccatttacacctacaccaccccgcccacctttgccccgcacattcac
tggcacatccccatggccatgaagatcccccacacttacactcccatttcccacacccac
tgcctctaccgggggcacaggctgtggtgggccttcctcctctcctccctgtctgtcttc
ctgggggggctgctggccctgctgctctggaaggttgctcacagagggttcaatagcatt
gggattttcagaccccgacgacagcgctgggcacacagacagagcattagtgtgcagaca
gatttcaatctgaggaatgccttgaaggaatgggcgttctctgtgatatcggctcaacat
ctgcctggcaaagtcctaatggtgctgatattctgtttcaacattggctccatcctgacc
tatattatcctttctactgacccagtagagtcctgcatgaaagaatacagcatagctttc
ctcattgatttgagcttcaacatctgccaccttctgtattttgggctcaggtttttggcg
gcccaggataagctgacggtttgggttgacttgagatccctggtggattttttcaccatc
actccatccttagttaccctgttttcccatcgagcctggctgggtctgaggttcatcaga
gctctgcacatactggagttaccagtcgttctgcagattctcaacgtcttcaacagcaac
agcaccactctgaaactctcccgcctggttgccatcctaacaggcacactgctgacctca
gctggtttcatccacctgctggagaactcaggtgacccctggctggacttctccaacccc
caacctctccactactttgagtgtgtttacttcctggttgttaccatgtcaacggtgggc
tatggtgacgtggagttgaggacgaccctgggacgcctcttcgtcatcatcttcatcttt
attggactgggtctgtttgccaactttgtcccagaggtggttcagatcatcatcaacagg
aagaggtttgatggtagcttcacgggtgtctcaggcaagacccatgtggtggtgtgtggt
cacatcactctgagcagcgcctctgccttcatgaaagattttctacatgaggacagggga
gaggtcgacgtcaaggtgctcttcctgggaaacttccgtcctaaccaggagctggaggcg
ttcttcctgaggtggttcctgaaggtcaccttctaccagggctcagtgatgcagaggaga
gacctggaaagagttaagatgcataaagcaggagcttgcctgatcatctgtgacaggttc
acctcagaccagcataaggaggacgctgccaatctcatgagggtgatctccatcaaacag
tattgtcccaacaccaggattatagttcagatgctgaagcacaacagtaaggcattcctg
cagaacgtgcctaactgggactggagtcgaggtgatgcagtgatctgcctggcagagctc
aaactgggtttcatgtctcagagctgcctggtgcctggcctctccacgctgttgaccaac
ctgttcaccatgcagagtgagatcgagcaggatggagacacctggcagaacctgtacaga
gagggcctctacaatgagatctacacagagcacctgtccccctccttcatagggatgtcc
ttcgctcaggccagcaagtcagtttgtcagtctgctacagagagacatatcagtgttcta
ttactacaaacaaacatgatctctctctgtctgcctgcctgtttgcctgtgtgcctgtct
gcctgtgtgcctgtctgcctgtctgtgtgtcaggctatgtttcctgaagctgagcagtgt
gtgttggtgaatcctcccagtcacatcaaaataaagctgtggactctgggtttcctcata
gccagcaatgccagtgatgccagaagggcgagtatgtactgctctgtgtgtcacagagac
atcaaggatttgcccaggatgagaccctgcaggtgcactgagcagaaagatgtctcatct
aacacctccgccatgagtctaggcttcagacgtccatcactgggagttctgcccttcagc
ccagagggagagactcttcgagagagggagtgtgtgtgggagcagcagcagcagcaggag
gagcagcaggaggtggggctggactctacaggactgttccactggtgcccacctgttccc
ctgaaggacatctcactgaccagacagagtgccagtaccctggcactgcaggaccacgtg
gtggtgtgtgtctttggggacgggggctccagcctgctgggcctgggggacttcatgatg
ccgctgagggccagcagcctgacggccccagagctgaggacggtcgtcttcctgggagac
ccacactacttcagcagggagtgggccaacatacaatacttccccaacatctacttcctg
cctggctctcctctgtgtggggcagacctgcgtgcgttgagggtggagcgctgtgccatg
gtggtggtcctcagctctctgtccagctccagcgacattgagccctccatgcaggataag
gagaccatccacttctgtgtcaacctctaccacatccgcttcagccccgagccaggccca
cgctgcacactcagtcacactcaaagtcacggccacggacaggggctggagcttggtcat
gggtttggtggtcataaccgtggtccgagccacgacacactagacttttcccacgtccct
acgatacccgagaaagctgaggtcacccctgcacacagcgccggcaccactgtccctctg
ctggtagagctggtgaacagctctaacgtgtgctttgtgaatgaggcggacagccaagag
gactcctccagcctgaccctgagccaggccttctctgtaggctccgtattctctgtcgac
ctactggactctctcatggcagccacgtacttcaacgccaacgtgcctggtctgatctgt
acgctggtgacgggtggcgacacccccttactggaggcccagctggcagaggacaaccag
ctgcggggaggggagatgtccatgaagatgtgggcgctgcgccaacgctccaaactggca
cagctggcactgcaagatgagcccctctgcagcctcgcttgtgaggacttcaaggagttg
ttctgccaggctctggactcgttggagatcctgtgttttgggctgtatcgcctgctggac
cctcctaacccctccatgaagaggtttgtaatcaccaacccgtcagcagagctcccgttg
ttgtcttcagacagagtcttctgctccgtacccttccaccagagtcacctgctcaccctg
aggagagccaagaccatcagtcaccgcctatga
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