Salvelinus namaycush (lake trout): 120051838
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Entry
120051838 CDS
T07522
Name
(RefSeq) replication factor C subunit 4-like isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03030
DNA replication
snh03410
Base excision repair
snh03420
Nucleotide excision repair
snh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120051838
03410 Base excision repair
120051838
03420 Nucleotide excision repair
120051838
03430 Mismatch repair
120051838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120051838
03036 Chromosome and associated proteins [BR:
snh03036
]
120051838
03400 DNA repair and recombination proteins [BR:
snh03400
]
120051838
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120051838
DNA Replication Termination Factors
ELG1-RFC complex
120051838
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
120051838
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120051838
Check point factors
HRAD17(Rad24)-RFC complex
120051838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_assoc_2
AAA_22
AAA_30
AAA_11
Mg_chelatase
DUF815
AAA_24
AAA_14
RuvB_N
SLFN-g3_helicase
AAA_28
AAA_5
AAA_19
Gp44_lid
Cdc6_lid
RPA_interact_N
ResIII
AAA_7
Kinesin
ATPase_2
Motif
Other DBs
NCBI-GeneID:
120051838
NCBI-ProteinID:
XP_038854648
UniProt:
A0A8U0R4C0
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All DBs
Position
Sna8:complement(23185067..23192957)
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AA seq
357 aa
AA seq
DB search
MQAFLKGTSTQGTRPLKEKGAGTSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTI
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRF
AQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANQVQEERLLEICYKENLKYSKEGIAALVKVSEGDLRKAITFLQ
SAAQLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVWNMVDEGYAATQI
INQLHEAIIEEELDDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCSVILQQATQSN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggaacatctactcaaggcaccagacctctgaaagagaaaggt
gccgggaccagtggagagaagaagcagaagtctgtcccctgggttgagaaatatagacca
aaatgtatggaagaggtggcgtttcaagaggaggtggttgctgtgctgaagaagactata
gagggcgctgatctccccaatctgctgttctatggaccacctggaacaggaaagacgtcc
accatcctggctgcagccagggaactttatgggccagagctgtaccgacagagagtcctg
gagctgaacgcctctgatgagagagggattcaggtggtcagagagaaagtcaagagattt
gcccagctgactgtagcaggacaccgcactgatgggaaaccatgcccaccctttaagatc
atcatcctggatgaggctgactcaatgaccaacgctgctcaggctgctctcagacgcacc
atggagaaggagtcccggaccacccgcttctgtctcatctgcaactatgtcagcaggatt
attgagcccttgacatccagatgctctaaattccgcttcaaacctctggccaatcaggtc
caagaagagcgcctgctagaaatctgttacaaggagaatctcaagtactcgaaggaggga
attgcagcgttggtgaaggtttcagagggggatctgagaaaagccataacctttcttcaa
agtgctgcacagctgaacacagataatgagatcacggagagcgcggtcatagagatagca
ggggttgttccccccaagatgatcgacaatttgcttaaaatctgttacaagggcacattt
gaaaaactagagattgctgtttggaacatggtagatgaaggctatgccgccacacagatc
atcaaccagctacacgaagccatcatagaggaagagctggatgacaagcagaagtctgcc
atcacggaaaagatggcagtggttgataagtgtctagtggatggtgcagatgagtacctg
cagatgctgagtctgtgttctgtgatcttgcagcaagccacccagagtaactga
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