Salvelinus namaycush (lake trout): 120052043
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Entry
120052043 CDS
T07522
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120052043 (lingo3a)
Membrane trafficking [BR:
snh04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
120052043 (lingo3a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_LRWD1
Ig_2
LRRNT
Cupin_1
LRR_6
V-set
LRR_9
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
120052043
NCBI-ProteinID:
XP_038854835
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Position
Sna8:complement(16261130..16262950)
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AA seq
606 aa
AA seq
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MAAVPGLGWPGLLLLLLTTVASTQSQGCPQRCECMAKLKSVACQGKRLSAFPDGISSDTR
LLDLSGNRLRWVEHGDLLSFPRLEELDLSENIITVLEPNAFSSLQSLRVLSLRGNQLKLV
PMGAFSRLTNLTTLDLSGNKIVILLDFTFQDLKSLRNLEVGDNDLVYISNKAFLGLVGLR
ELTIERCNLTSISSQSLSYLRSLVTLRLRYLSISSLEDRNFRKLGGLRGLEIDHWPFLEH
ISPHSLQGLNLSWLSITNTNITSVPTAALRSLPHLISLNLSYNPISVLESWALRDLVRLK
ELHLVNTNLMTVQPYALGGLRQIRLLNLSTNALVTLEEGAFQSVNTLETLRVDGNPLSCD
CRLLWILQRRKTLNFEGKSPVCAGPMEVQGRALSAFSDSALFDHFTCQKPKIRNRKLQPV
TAREGQVVSFVCRAEGEPTPIIFWVSPQRRRITTKSTGRVTVLPEGTLEIRYAQLTDTGT
YICIASNAGGNATYFATLTVSALPLDAALMANRTYYTGDLNETNLNDTKVFLKFTLDLKT
ILISTAMGCCLFLGVVVFCFLMLFAWSQGRGQHKNNFSVEYSFRKVDGPAASGGQGGARK
FNMKMI
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgttccaggcctggggtggcctggcctgctactgttgctgctgactactgtg
gcctccactcagagccaaggctgtccccagcgctgtgagtgcatggccaagctcaagtct
gtggcatgccagggcaagcgcctgtctgccttccccgacggcatctcctcggacacacgt
ctgctggacctgagtgggaacaggcttcgctgggtggagcatggcgacctcctctccttc
cctcggctggaggagctggacctgagtgagaacatcatcaccgtcctggagcccaacgct
ttctctagcctgcagagcctgagggtgctgtcgctgagggggaatcagctcaaactggtc
cccatgggcgccttctcacgcctcaccaacctcaccacactggacctgagcgggaacaag
attgtcatcctgttggacttcaccttccaggacctgaaaagcctgaggaacctggaggtt
ggtgacaacgacctggtctacatctccaacaaggccttcctgggcctggtgggtctgagg
gagctcaccattgagaggtgtaacctgacctccatctccagccagtctctgtcctacctc
cgcagcctggtcactctgcgcctgcgctacctcagcatctcctccctggaggaccggaac
ttccgtaaactgggggggctgcgggggctggagatcgaccactggcctttcctggagcac
atctccccccacagcctccagggccttaacctgtcctggctgtcgatcacaaacaccaac
atcacctccgtgcccacggccgccctgcgcagcctgccccacctcatcagcctcaatctc
tcatacaaccccatctccgtgctggagtcctgggccctgagggacttggtccgtctgaag
gagctgcacctggtcaacaccaacctgatgacggtgcagccgtacgccctcggcggcctt
cggcagatccgcctgctcaacctgtccactaacgccctggtaaccctggaggagggtgcc
ttccagtccgtcaataccctggagacgctgcgtgtggatgggaaccctctgtcctgcgac
tgccgcctgctctggatcctccagcgcaggaagaccctcaactttgaagggaagtcccca
gtgtgtgcgggccccatggaggtgcagggcagggccctcagcgcattctcagactctgcc
ctcttcgaccactttacctgccagaagcccaagatacgcaacaggaagctgcagccagtg
actgccagggagggccaggtagtgtcttttgtgtgccgggcggagggtgagcccacacct
atcatcttctgggtatctccccagcgccgccggatcactaccaagagtactggacgtgtc
accgtcctaccagagggaacgctggagatccgctacgcccagctgaccgacaccggcacc
tacatctgcattgccagcaacgccgggggcaatgccacctactttgccacgctgaccgtg
agcgcactgcctctggacgctgcactcatggccaaccgcacatactacacaggtgacctc
aacgagaccaatctgaacgacaccaaggtcttcctcaagttcactttggacctcaagaca
atcctgatatccacagccatggggtgttgcttgttccttggggtggtggtcttctgtttc
ctgatgctgttcgcatggagccagggccggggacagcacaagaataacttctcagttgag
tactctttcagaaaggtggacggccctgcagccagcggcggacaaggaggggcccgcaag
ttcaacatgaagatgatttga
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