Salvelinus namaycush (lake trout): 120052172
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Entry
120052172 CDS
T07522
Symbol
cnga1a
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide gated channel subunit alpha 1a
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
120052172 (cnga1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120052172 (cnga1a)
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120052172 (cnga1a)
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GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
Ion_trans_2
Ndc1_Nup
DDHD
PFF1_TM
Nop14
Motif
Other DBs
NCBI-GeneID:
120052172
NCBI-ProteinID:
XP_038854931
UniProt:
A0A8U0R680
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Position
Sna8:49198343..49216961
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AA seq
701 aa
AA seq
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MISTSSTRPFLAVAPRISPNMATDTEEDSEDEIDETSPGPGRLFNVNNSNNNEEEEKKKK
KKEKKEKKEKKEXAPKLKKKEKKKQKEQEEKEKEEKEKQEKEKEEKEKKEKEEKEKKEKE
KKEGPKEVFFINPAGSLYYNWLFIITIPVMYNWTMIIARACFEELQHNHLVTWMILDYIS
DVLYLADMAFRTRTAYLEQGLLVKDKKLLWERYISSLQFKLDAVSMLPTDVFYIYLGINY
PEIRLNKLLRITRMMEFFTRTETKTNYTNLFRISNLVMYIIIIIHWNACLYYSFSKSIGF
GSDPWVYPDLNDPEEPEFGELGRKYSFSLYWSTLTLTTIGETPSPELDSEFFFHVLDFLV
GVLIFATLVGNISSMISNISAARVEFQARIDNIKQYMQKWKVDKELELRVITWFDYLWTN
DKAQDERETLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLIELVLKLQPQVFSPGD
YICKKGDIGREMYIVKEGKLAVVADDGVKQFCVLGDGSYFGEISILAIKGSKAGNRRTAN
IRSIGYSDLFCLSKDDLMESLTEYPEAKGMLEEKGRQILLKDGLLELDPSKIIPETTEIE
EKVNRMYSNLELMQTKLKKLLGDYSISQRATRERIAEIERLTGEVVAEEDLDEEEKEGGE
EEKKEGEAEEKKDEEKKEEEEEKKEERRKTITHDDRRDTGH
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcacatcaagcactcgtccgttcctggcggttgcacctcgcatttctccaaac
atggccacagacacagaggaggacagtgaggatgaaatagatgaaacttctcctggccca
gggcgtctgttcaatgtgaacaacagtaacaacaatgaggaggaggagaagaaaaagaag
aaaaaggagaagaaagaaaagaaagagaaaaaagagtaagcacctaagttgaaaaagaaa
gaaaagaagaagcagaaagagcaggaggagaaagaaaaggaggaaaaagaaaagcaggag
aaagaaaaggaggagaaagaaaaaaaggaaaaagaggaaaaggagaaaaaggagaaagag
aaaaaggaggggcccaaagaagtgtttttcatcaatccagcgggcagtctgtactacaac
tggctgttcattatcacaataccagtcatgtacaattggaccatgataatagccagagcc
tgctttgaggagctgcagcataatcacctagtcacctggatgattctggactacatctct
gatgtcctctacctggctgacatggccttcaggaccaggacagcctacctggagcaaggc
ctgctggtcaaagacaagaagctgctgtgggagcgttatatcagcagcctccagttcaag
ctggacgccgtctccatgctgcccaccgatgtgttttacatctacctggggatcaactac
cccgagatccgcctcaacaagctcctccgaatcacgcgtatgatggagttcttcacccgc
accgagaccaagaccaattacaccaacctcttccgcatctccaacctggtcatgtacatc
atcatcatcatccactggaatgcctgcctctactactccttctctaagtccatcggcttc
ggctctgacccctgggtctacccggacctgaatgacccagaagagccagagttcggcgaa
ctggggaggaagtactccttcagcctctactggtccacgctgacgctgaccaccatcggc
gagacgccatcaccggagctggactcagagttcttcttccatgtgctggacttccttgtg
ggtgtgcttatcttcgccaccctggtgggcaacatcagctctatgatctccaacatcagc
gccgcgcgggtcgagtttcaggcacgcatcgacaacatcaagcagtacatgcagaagtgg
aaggtggacaaggaactggagctgcgagtcatcacgtggttcgactacctgtggaccaac
gacaaggctcaggacgaaagggagacgctgcggtacctgcccgacaagctcagggccgaa
attgccattaacgtccacctggatactctcaagaaggtccgcatcttcgctgactgcgaa
gcgggcctgctgattgagctggtgctcaagttgcagccccaggttttcagccctggcgac
tacatctgtaagaagggcgacatcggccgtgagatgtatattgtcaaggagggcaagctg
gcggtggtggctgatgatggcgtcaagcagttctgcgtgctgggagatggcagctacttt
ggggagatcagtatcctagcgataaagggttctaaggcagggaaccggaggacggccaac
atccgcagcattggctactcagatctcttctgcctgtccaaggatgacctgatggagtca
ttgaccgagtacccggaagccaagggcatgctggaggagaaaggtcgtcagatcttgctg
aaggacggcctgctggaactggacccttccaaaattatccccgaaaccacagaaatcgag
gaaaaggtgaaccgcatgtacagcaacctggagttgatgcagaccaagctgaagaagctg
ctgggagactacagcatcagccagagggccacgagggaacgcatcgctgagatagagcgg
ctgactggagaggttgtagccgaggaggacctagatgaggaggagaaggagggaggggag
gaggagaaaaaagaaggggaggcagaagagaagaaggatgaggagaagaaagaggaggag
gaggagaagaaagaagagaggagaaaaacaattacccatgatgacagacgtgacacaggg
cattag
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