Salvelinus namaycush (lake trout): 120052319
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Entry
120052319 CDS
T07522
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
snh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120052319 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
120052319 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120052319 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120052319 (gtf2h1)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120052319 (gtf2h1)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120052319 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
120052319
NCBI-ProteinID:
XP_038855086
UniProt:
A0A8U0R2S0
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Position
Sna8:complement(4338757..4356419)
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AA seq
550 aa
AA seq
DB search
MTALSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNLHFSNESTALKDRDAAKDLLQQLLPKFKKRANKELEEKNRMLQE
DPVLFQLYKDLVVCQVISAEEFWANRLSINNVDHSLSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHDMTEKEFWTRFFQSHYFHRDRINTGLQD
IFSECAKQDEKGLKSMVFQGVKNPMVDLLSLEDKSLDEGYGTNSTGPSTSNTNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADAPNGQACETSSTDGNSRDSDFFQPPIKKVKIQDVI
EYEDLHRENGKKTVALNLKKSDRYSHGPVPLLPQQYTTSQDIVNSVNCIKHEIASYRPCL
TQVMSSSTASSAIAALSPGGVLMQALAQQAINQMVPNDVQEELKHLYTAAGELLRHFWSC
FPVNTPFLEEKVVKMRSNLERFQMTKLRPFQEKVQRQYLSTNLTGHLEDMFQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgttgtcggaggaggtgctgctggtggtgaagaaggtccgacagaggaagcag
gatggaaccctatacctgatggcagagaggatagcctggggaccagaggggaaagaccgt
ttcaccgtcagccacctgtatgctgatatacgttgtcagaagatcagcccagatggcaag
gccaagattcagctgcagttggtcctacacacaggggagagcaccaacctccacttttcc
aacgagagcactgccctgaaagaccgcgatgcagccaaggacctccttcagcagctgctg
cccaagttcaagaagagggcaaacaaggaactggaggagaagaacagaatgttacaggaa
gatccggtgttgttccagctgtacaaggatctggtggtgtgtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcataaacaacgtggatcactccctctccaacaacaag
caggaagttggcatctcggcagccttcctggcggacatccggccccagacagatggctgc
aacggccttagatacaaccttacctctgacatcatcgagtcaatcttcagaacgtaccct
gcagtgaaacagaagtacggtgagaacgttcctcatgacatgacagagaaggagttctgg
acgcggttcttccagtcccactacttccaccgagaccgcatcaacacgggcctgcaggac
atcttctccgagtgtgcaaagcaggacgagaagggcctgaagtccatggtgttccaagga
gtgaagaacccaatggtggacctgttgtcactggaggacaagtcgttagacgagggttat
gggactaactccacagggccttctacgtccaacactaacaagacagtgaaggagaacagt
aactctgccataatcaagaggttcaaccaccacagtaccatggtgctggcagcaggctcc
ggaaagaaagcggatgctcctaacggtcaggcctgtgagactagcagtacagatggaaac
tctagggattcagacttcttccaaccacccattaagaaggtgaaaatacaagatgtcata
gagtatgaggaccttcatagggagaatgggaagaagacagtcgctctgaacctcaagaag
tctgacaggtactctcatggtcccgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcgtcaactctgtcaactgcataaagcatgaaatagccagctacaggccctgcctt
actcaggtgatgtccagcagtacagccagttctgccatcgctgccctctccccagggggc
gttctcatgcaggcattagcacagcaagccattaaccagatggttcccaacgacgttcag
gaggagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacacctttcctggaagagaaggtggtaaagatgaggtccaacctggag
agattccagatgaccaagctccgccccttccaggagaaagtccagcgtcaatacctgagt
actaaccttactggtcaccttgaggacatgtttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
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