Salvelinus namaycush (lake trout): 120052349
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Entry
120052349 CDS
T07522
Name
(RefSeq) transcription factor SOX-6-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120052349
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120052349
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
120052349
NCBI-ProteinID:
XP_038855132
UniProt:
A0A8U0R4J0
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Position
Sna8:complement(7567299..7750974)
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AA seq
764 aa
AA seq
DB search
MMSSKQATPPFPPATEEEEAMGQDDVGWANEDRESQDQPASPTLHSKPLPEEHQPIRDSQ
PELAWKSIGSTQTDNGSSKGCSLYSYRNNSTSPPKPEECSRERGEQLGGSTFGTLERRKG
SLADVVDTLKQKKLVELTKTEQDESSCMERLLSKDWKDRMDRLNASKLLGEVKGTPESLE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAVSQMEKQRQQMELARQQQDQIARQQQQLM
QQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAAQGFLFPHNMSYKPGDNYPM
QFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMASLPQPPNSSDPLSSPGLKSE
KRVLSPVTHIKEEGSTQPLNLSARSKTGEPHRSPSSPSHTLFPSNKTSPITMGKGRIPSP
LSNMGRGSLDILSSLNSTALFGDQDAVTKAIQEARKMREQIQREQLHHQQQQSLEAKLTA
LSGMSLSNGSKERMHFESLSQHLGNLGEDGKMGHRVIDLTRPEDLHGGASTTEARVFREA
RGRNSAEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKSMSNQEKQPYY
EEQARLSKNHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFSVGPQP
QIPISNSAGGLYPGAITMATATPSPHLTSDCSSASASPEPAIPVIQSTFGVVKPEPVAMV
TGDHPVNGGDEIDMYEDFEDKSDYSSDHETRSLSVPTEPAQKNF
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccaagcaagccacacctccgtttcccccagcgacggaggaagaggaagcg
atgggtcaggacgatgtgggctgggccaatgaggacagagaaagccaggaccagccggcc
tcgcccactctgcacagcaaacccctcccagaggagcaccagccaatcagagacagccag
cctgagttggcgtggaagagtataggctctactcagacggacaatggtagcagcaagggc
tgttccttgtactcctaccggaataactctacctctccaccaaagcctgaggagtgttcc
cgcgagcggggcgagcagctaggcggatccaccttcggaacacttgagcgccgcaaagga
agcctggccgacgtggtggacacactgaaacaaaagaaactggtggagctgacaaagaca
gagcaggacgagtcgtcctgtatggagagacttctgtctaaggactggaaagacaggatg
gacagactgaatgccagcaagctcctaggagaggtcaaaggtaccccagagagtttagag
gagaaggagcggcagctgtccaccatgatcggccagcttatcagcctgcgggagcagctc
ctggcggcccacgacgagcagaagaagatggctgtgtcacagatggagaaacagaggcag
caaatggagctggcccgccagcagcaggaccagattgcgaggcaacagcagcagctcatg
cagcagcagcacaagatcaacgttctccagcagcagatacaggtgcagggtcacatgcct
cctctgatgatcccagtgtttcctcacgaccagcgatctctggctgctgccgccgctgct
gcacagggcttcctcttcccacacaacatgtcctacaaaccaggtgataactaccccatg
cagttcattccatccacaatggcagctgcagccgcgtcaggactgagcccgctacaacta
cagcagctgtacgccgcccagctggccagcatgcagatctcacctggagccaaaatggcc
tcactgccacagcctcccaactcctcagaccccctatcgtcccccggcttgaagagtgag
aagagagtgttgagtcctgtcactcacattaaggaggaagggtcgacgcagcccctgaac
ctctcagcccgatccaagactggcgagccccaccgctccccgtcctcgccgtcacacacc
ctgttccccagcaacaagaccagccccatcaccatggggaaggggcgcatccccagcccc
ctctccaacatgggcagaggctcactggacatcctgtccagcctgaactccacggcgttg
tttggggaccaggacgcggtaacgaaggccatccaggaggccaggaagatgagggagcag
atccagagagaacagcttcatcaccagcagcagcaaagcctggaggccaaactcacagcc
ctgagcggcatgagcctcagcaatggcagcaaggagcggatgcactttgagagtttgagt
cagcacctgggcaacctgggagaggatggaaagatgggccacagggtcattgacctcacc
agacctgaggatcttcatggtggtgccagcactacggaagcacgggtcttcagggaggcc
aggggcaggaacagtgccgagccccacatcaagaggcccatgaatgccttcatggtgtgg
gccaaggacgagaggaggaagatcctgcagaccttccccgacatgcataactccaacatc
agcaagatcctgggttctcgctggaagtccatgagcaaccaggagaaacagccatactat
gaggaacaggcccgtctcagtaagaaccatctggaaaagtaccccaactacaagtacaag
ccccggcccaagaggacctgcatcatcgacgggaagaagctgcgcatcggggagtacaag
cagatgatgcgctcgcggcgtcaggagatgaggcagttcttcagtgtggggccacagcct
cagatccccatcagcaacagcgctggcggcctctacccgggcgccatcaccatggcgaca
gccacgccttcaccgcacctgacatcggactgctccagcgcgtcggccagccccgagccc
gcaatccctgtcatccagagcacgttcggcgtggtcaagcccgagccggttgccatggtg
accggtgaccacccggtcaatgggggggacgagatagacatgtacgaagattttgaggac
aaatcggactacagcagcgaccacgagacacggagcctgtcagtgccaactgaacctgct
cagaagaacttctga
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