Salvelinus namaycush (lake trout): 120052395
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Entry
120052395 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3-like
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120052395
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120052395
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120052395
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-RING_UBOX
zf-C3HC4
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
zf-RING_5
zf-rbx1
EIF3I
zf-C3HC4_3
zf-C3HC4_2
Beta-prop_WDR3_1st
zf-RING_11
Beta-prop_WDR3_2nd
CFAP43_N
zf-RING_Vps41
Beta-prop_WDR75_1st
WD40
zf-C3HC4_4
zf-ANAPC11
WD40_2
Rtf2
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_Prp19
Zn_ribbon_TiaS
Beta-prop_WDR36-Utp21_1st
Beta-prop_ACSF4
Beta-prop_WDR36-Utp21_2nd
DUF6779
NBCH_WD40
Rab11-FIP3
Motif
Other DBs
NCBI-GeneID:
120052395
NCBI-ProteinID:
XP_038855199
UniProt:
A0A8U0R820
LinkDB
All DBs
Position
8:complement(11884895..11900846)
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AA seq
715 aa
AA seq
DB search
MEAMEVDLQLGVPRREPESDAMAGNVELPIIIPDSGSETEVEDEADAAPLDPPRLPTTWA
FSQNRIRVEGQVGPRIRMEGHIGPSVTTAAALRQRRARPGVRALYPTQTSPSASRFLDFL
LRVPAANPDSGNTTESSESEDEADPAGPVDPHDPDEPAVPSSLGMNPPVAATPLQGLNPS
DSNATTEAARTETGNQVNPESVTAPVATSGAALRSSQGDEGEGETCSICFEPWTTSGEHR
LATLRCGHLFGYTCIGRWVKGQGQGAKCPQCNKKAKRSDIVLLYARKLRAVDNTEQENMK
RSLEQEQSMRRNAELESAQCRLQLQVMTDECGKLRKQIQELKTLMAQPGCRPSKNSGASL
SGLSQRQDSTQGGHYVFSKAVLVSQAGGCRVLSYCEPLSCLLASLPSPHTTLVPGYGVKK
VSTVNLKACQYVPIHVKQIRGLAFNRQADSLLLSAALDNTIKLTSLMTNTVVQTYNTGKP
VWSCCWCLDNNNYVYAGLSNGSVLVYDTRDTSTHVQELQPLRSRCPVASLSYVPRASSSS
FPCGGLIAGSLEGGCFWEQVDSTTYRPHILPLETGGCTDIQVEPESRHCLVTYRPGRSNP
SLRCVLMELNRTLQQDAAQEPLCSCYPVQTFSAGSSCKVLTKNAVFRSPAGKGSTLVCAG
DESTNSTMVWDAGSGSLIQKLPADLPVLDICPFEVNQGSYLASLTEKMLKIYKWE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatggaggtggacttgcagctgggggtccccaggagggaaccagaatcagat
gctatggcaggcaatgtggagctccctatcatcatccctgactctggcagcgaaactgag
gttgaggacgaggcagacgcggctcccctagacccgccacggctcccaaccacctgggcg
ttcagtcagaaccgaatcagagtggagggtcaagttgggcccaggatcagaatggagggt
catattgggcccagcgtcactacagcagcagccctgaggcagcggagagccaggccaggc
gtcagggcgctctaccccacccagacctctccctctgctagccgcttcctagatttcctg
ctgcgagtccctgcagccaaccctgactctggcaataccactgagtcgagcgagtcagag
gatgaggcagaccccgcagggccagtagaccctcacgaccctgacgaacctgctgttccc
tccagcctaggaatgaaccctcctgtggcagccacgccactgcaaggcctaaatccttca
gattctaatgcaaccacagaggctgcgaggacagagactggaaatcaagtgaatcctgag
agtgtaacagccccagtggccaccagtggtgcggctcttcgttcgtcccaaggagatgag
ggggagggggagacctgctctatctgctttgagccctggaccacgtcaggggagcaccgc
ctggccaccctgcgctgcggacatctcttcggctacacctgcattggccgctgggtgaag
ggccagggccagggagccaagtgtccccagtgcaacaagaaggccaagcgctctgatatc
gtcctcctgtacgcacgcaagctgagggctgtggacaacacagagcaggagaatatgaag
aggtcattggagcaggagcagtcaatgcgtaggaatgctgaactagagtcagcccagtgc
cggctacaactgcaggtgatgacagacgaatgtgggaaactacgcaagcagatacaggag
ttgaagacgctgatggcccagcctggctgtaggccctctaagaactcaggggcctctctc
tccgggctctcacagagacaggacagcacccaggggggccactacgtcttctccaaggcc
gtgctagtgtcccaggcggggggctgcagggtgctgtcctactgtgaacccctcagctgc
ctgctggcctcccttccctccccacacaccaccctggtgcccggctacggtgtgaagaag
gtgagtacggtgaatctgaaggcatgccagtacgttcccatccatgtcaaacagatcaga
ggcctggcattcaacagacaagctgacagcctcctgctctctgctgccctggacaacacc
atcaaactcaccagtctaatgaccaacacagtggtgcagacgtacaacacgggtaagcca
gtgtggagctgttgctggtgcctggacaacaacaactatgtgtacgctggtctcagtaac
ggctctgtgctggtgtatgacaccagagacaccagcacacacgtccaggagctgcagcca
ctacgctctaggtgtcccgtggcctccctgtcctacgtgcctcgcgcctcctccagctcg
ttcccgtgtggcggcctcatcgcaggttctctggaggggggctgcttctgggagcaggtg
gacagcaccacttacagaccccacattttgcccctggagacaggaggctgcacagacatc
caggtggagccagagagcagacactgtctggtcacctacagaccagggcgctccaacccg
tctctgcgttgtgttctgatggagctgaacaggactctacagcaggatgcggcccaggag
cccttgtgttcctgctaccctgtccagaccttcagcgccggctcctcttgcaaagtgctc
accaagaacgctgtgttcagaagcccggccgggaagggctccactttggtctgtgccggg
gacgagtccactaactccaccatggtgtgggatgcagggagtggatccctgattcagaag
ttgcctgctgacctcccagtgttggacatctgcccgtttgaggtgaatcagggcagttac
ctggcctcgctcactgagaagatgctcaaaatctacaagtgggaataa
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