Salvelinus namaycush (lake trout): 120052403
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Entry
120052403 CDS
T07522
Symbol
cnot2
Name
(RefSeq) CCR4-NOT transcription complex subunit 2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120052403 (cnot2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120052403 (cnot2)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120052403 (cnot2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120052403 (cnot2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120052403
NCBI-ProteinID:
XP_038855211
UniProt:
A0A8U0UKQ7
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Position
Sna8:complement(12132005..12138297)
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AA seq
522 aa
AA seq
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MFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDMLSSPSPSSSGQLSQLGASLYGP
QSALGFSIRGMGNNTPQLNRSLTQGTPLPSHITPTTGVPTMSLHTPPSPSRGILPMNSRN
MLNHSQVGQGIGMGGGRTNSMGSSGLGSPNRSPPSIICMPKQQPARQPFTINSMSGFGMN
RNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSANPTPLLNPLAGRAP
YVGMVTKPSNEPTQDFSIHNEDFPALPGPNYKDSTLSNDDSKTNLNSTGKSTSSADGPKF
PGDKTSSAQNNSQKKGIQVLPDGRVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLAL
GSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLAR
YGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGT
YYFFDCLNWRKVAKEFHLEYEKLEERPHVPSTFNYNPAQQAF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtggaaagtgactaccctgatgag
aacatgtactacagccagccgtccatgtacccacatcggtcggacaaagacatgctctcg
tctccctcaccgtcgtcatcaggtcaactatcccagcttggggccagtttatatggccca
cagagtgcactaggcttctcgataaggggcatgggtaacaacacgcctcagttaaaccgc
agcttaacgcaaggcactccgctaccgagccatatcacccccaccactggggtacccacc
atgtccctccatactccaccctcgccaagcagggggatcctgccgatgaactcgaggaac
atgctgaaccactcccaggtgggccagggcattgggatgggcggcggcaggaccaacagc
atgggcagctcagggctgggcagccccaaccgcagcccccccagcattatctgtatgccc
aaacagcagcctgcacggcagcccttcaccatcaacagcatgtcgggattcgggatgaac
cggaaccaggcgtttggaatgaacaactcgttatcaagcaacatcttcaatggcacagac
ggcagtgaaaacgtgacggggctagacctgtctgacttccctgcgttagcagacaggagt
cggagggaaggaagcgcaaacccaacgccactacttaacccactagctggaagggccccc
tatgttggcatggtgacgaagccatcgaacgagccgacgcaggatttctccatccacaac
gaggacttccctgcactgcctgggcccaactacaaggactccacgttgagcaacgatgac
agcaaaacaaacctaaactctacaggcaagagcacgtccagtgcagacggtcctaagttc
cccggagacaagacgagctcagcacagaacaacagccagaagaaagggatccaggtgtta
cctgacgggcgggtgacgaacattcccgggggaatggtgacggaccagtttgggatgatt
ggcttgctgacgtttatccgagcagcggagacggacccgggcatggtgcacttggcactg
gggagtgacctcacaacgcttggactcaacctcaactctccagaaaacctgtaccccaag
tttgcttccccctgggcatcagcaccgtgtcgacctcaagacattgacttccacgtcccc
tctgagtacttaaccaacatccacataagggacaagctggcagctattaaactggcgcgg
tacggtgaagacctgctgttctatctgtactacatgaacggaggagacctgctacagctc
ctggcagcagtagagctctttaaccgggattggcggtaccacaaagaggagcgggtgtgg
atcacgcgggcgccgggcatggagcccacactaaagaccaacacctatgagagggggacc
tactacttctttgattgtcttaactggaggaaggtagccaaggagttccacctggagtac
gaaaagctagaagagaggccccacgtcccatctaccttcaactacaacccagctcagcag
gccttctga
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